Gene detail

Detail information of GWHGAAZE007502

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006466917.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Citrus sinensis]
Swissprot	tr\|C0LGS2\|Y4361_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (Precursor)
trEMBL	tr\|A0A067G6D5\|A0A067G6D5_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO71127.1}
TAIR10	AT4G36180.1	2E-145	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	46508048	46509619	+
GWHAAZE00000002	mRNA	46508048	46509619	+
GWHAAZE00000002	exon	46508048	46508603	+
GWHAAZE00000002	exon	46508817	46509619	+
GWHAAZE00000002	CDS	46508048	46508603	+
GWHAAZE00000002	CDS	46508817	46509619	+

Transcript Sequence
>GWHTAAZE007510 ATGGCATTGCGCAATCTAACTTCGTTACATCTTGGTGGGAACAAGTTTTCGGGGGTAATTTCTTCCAATATTGGGAATTTAGGACGTCTATCTGTTCTAAATTTGAGTGGCAACAGTTTTTCGGGTGCAATTCCAGCTAGTGTTGCAAGCCTTTACAAGCTAACAACACTTGATTTGAGCAAACAGAATCTCTCTGGGGAGTTGCCTTCTGATCTTGCGAGTTTGCCAAATCTGCAAGTCATTGCTTTGCAAGAAAATATGTTTTCTGGGAATGTTCCTGAAGGTTTCAGCAGCTTAATGGGTTTGCGCCTTTTGAACCTCTCTTTCAATTCATTTACTGGTCAAATCCCATCAACATTTGGATTCCTTAAATCATTGATTGTTCTTTCTATGTCGAATAATCACATCTCTGGTTCTATTCCACCTGAACTAGGCAATTGTTCTGATATTCAAGTTTTGGACCTTGGTTCAAATTCTTTGAGTGGTCAAATTCCAGTTGATCTCTCTCGTCTCACCCTTTTAACTGAGCTTGATCTAGGTAGGAACAATTTGACAGGTGAGATACCGAGAACATTAGGTTCTCGGTTCAACAATCAGTCCTTATTTGCCGGTAATCCTGAGTTATGCGGGAGGCCATTGAATAGGGAGTGTGAGAGAACAAGAAGTGGTGGTGCTGGTGGTAGGAATAAGGGGCTGATTCTGTTAATTGCCTTGGCTGCAAGTGGAGCTTTCCTCATGGCATTATGCTGCTGCTTCTACATTTACGGCCTCTTAAAGTGGCGAAAGAGACTTAAAGAAAAGGCAACCGGTGTGAAAAAGCGCAGCCCAGGAAGGGCTAGTTCAAGAGCAAGCGGAGGCCGAAGCAGTAGTGAAAATGGTGGACCAAAGCTCGTTATGTTCAACAACAAGATCACTCTAGCTGAAACATTAGAAGCAACAAGGCAATTTGACGAAGAACATGTGCTGAGCCGAACCCGTTACGGATTAGTATTCAAGGCCTGTTATAATGACGGGATGGTCCTCTCAATCCGTCGACTCCCCAATGGGTCACTGGACGAAAACATGTTTAGAAAAGAAGTCGAATCGCTAGGGAGAGTGAAGCACCGAAACCTAACAGTCCTTCGGGGCTACTATGCTGGTGCACCGGACCTAAGGCTCCTAGTCTACGACTACATGCCAAATGGAAACTTAGCGACCCTCCTTCAAGAAGCGTCTCACCAAGACGGGCACGTTCTCAATTGGCCAATGAGGCACCTGATCGCACTAGGTATCGCACGAGGTCTAGCATTTCTCCACACAACCTCCATGGTTCACGGTGACATAAAGCCCCAAAACGCGTACTATTCGATGCTGATTTGA

Network for GWHGAAZE007502

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	4	62	6.40E-08
PF00560.34	LRR_1	102	123	0.58
PF00560.34	LRR_1	174	193	0.79
PF00069.26	Pkinase	325	445	5.50E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.489
	SRR3591706	second leaf	0.746
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	6.844
	SRR3591709	Stem	2.645
	SRR3591710	White floral bud	0.755
	SRR3591711	White flower	0.956
	SRR3591712	Green floral bud	0.693
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.142
	SRR8316896	Juvenile bud stage	2.288
	SRR8316897	Juvenile bud stage	0.793
	SRR8316894	Third green stage	0.606
	SRR8316900	Third green stage	1.047
	SRR8316901	Third green stage	1.063
	SRR8316898	Complete white stage	0.095
	SRR8316899	Complete white stage	0.723
	SRR8316903	Complete white stage	0.318
	SRR8316902	Silver flowering stage	0.108
	SRR8316904	Silver flowering stage	0.030
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.019
SRP132670	SRR6706286	Control	0.670
	SRR6706287	Light intensity 50%	0.527
	SRR6706288	Light intensity 20%	0.566
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.144
	CNS0095593	Slightly white alabastrum(diploid) 2	1.273
	CNS0095594	Slightly white alabastrum(diploid) 3	1.726
	CNS0095595	Whole white alabastrum(diploid) 2	0.822
	CNS0095596	Whole white alabastrum(diploid) 3	0.209
	CNS0095597	Whole white alabastrum(diploid) 4	1.069
	CNS0095598	Silvery flower (diploied) 1	2.040
	CNS0095599	Silvery flower (diploied) 2	0.940
	CNS0095600	Silvery flower (diploied) 3	1.081
	CNS0095601	Golden flower (diploid) 1	1.302
	CNS0095602	Golden flower (diploid) 2	0.796
	CNS0095603	Golden flower (diploid) 3	1.647
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.504
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.671
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.894
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.560
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.338
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.982
	CNS0095610	Silvery flower (tetraploid) 1	0.339
	CNS0095611	Silvery flower (tetraploid) 2	1.294
	CNS0095612	Silvery flower (tetraploid) 3	0.165
	CNS0095613	Golden flower (tetraploid) 1	0.108
	CNS0095614	Golden flower (tetraploid) 2	0.146
	CNS0095615	Golden flower (tetraploid) 3	0.114
CRA001975	CRR073297	Stem 1	3.969
	CRR073298	Stem 2	3.790
	CRR073299	Stem 3	4.310
	CRR073300	Leaf 1	0.709
	CRR073301	Leaf 2	1.486
	CRR073302	Leaf 3	1.036
	CRR073303	Juvenile bud 1	0.417
	CRR073304	Juvenile bud 2	0.174
	CRR073305	Juvenile bud 3	0.836
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.188
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.168
	CRR073317	Gold flowering 3	0.121
	CRR073318	Tawny withering 1	6.359
	CRR073319	Tawny withering 2	5.711
	CRR073320	Tawny withering 3	6.764