Gene detail

Detail information of GWHGAAZE006166

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006363743.1	PREDICTED: LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At1g12460-like [Solanum tuberosum]
Swissprot	tr\|C0LGE4\|Y1124_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At1g12460 (Precursor)
trEMBL	tr\|M0ZXF4\|M0ZXF4_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400010074}
TAIR10	AT1G12460.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	20397591	20400720	-
GWHAAZE00000002	mRNA	20397591	20400720	-
GWHAAZE00000002	exon	20397591	20399238	-
GWHAAZE00000002	exon	20399558	20400720	-
GWHAAZE00000002	CDS	20399558	20400720	-
GWHAAZE00000002	CDS	20397591	20399238	-

Transcript Sequence
>GWHTAAZE006174 ATGAAAAGAGTAAAGTCAGGACACTCTTTTCTCACCACTCTCTTCTTGTTGGCATTTGGGTTCACTGTAGTCTCGCCGGTGACCGAGAAGGAGATCTTGCTTCAGTTCAAAGGTAACATTTCAAGTGATCCTTATAATAGCTTAAGTTCATGGGATTCTAGTAGAAGCCCTTGCATTGATTACAGCGGTGTGTTCTGTAATTCTAATGGAAATGTGTATAAAATTGTGTTGTGGAACACTAGCTTGGGTGGAGTTTTGTCTCCCGGGTTATCGGAATTGAAATCTTTGAGGATTCTTTCCTTGTTTGGGAACCGATTTTCCGGCAATATTCCACCCGAGTATGGTGAGATTGATACACTTTGGAAGATCAATCTCAGCTCCAATGCACTATCCGGGTCAATCCCGGAGTTTTTAGGTGATTTATCAAATATTCGGTTTCTTGACTTGTCTAAAAATGGGTATGCCGGAGAGATTCCTTCGAATTTGTTCAAGAAATGTTACAAAACAAAGTTTGTTTCTCTTGCGCGAAACAATCTTTCGGGTTCGATTCCTTTATCTATTGGGAACTGTTTGGATCTTAATGGCATTGATTTGTCATTCAATAGTTTGAGTGGTGAGTGGCCTTCACAAATTTGTGATATTCCCGGGTTGGTTTACTTGTCTTTGAGGAGCAATTTATTGACCGGAAGTGTTGAAGAACAGGTTGCTGCTTGTGGGAGCTTGGAGCTTTTGGATCTTGGTGGCAATATGTTTACTGGGTTGGCTCCTTTTGGGGTTCTTGAATTGACAAATCTTACTTATTTCAATGTTTCGAATAACGGGTTTCGTGGGGAAATTACGGGTATCGAAAGTTGTAGTGAGAGATTGGAGATTTTAGATGCTTCGGGAAATGATTTCTATGGTGAGATCCCATTGAGCATCACAAAATGCAGTGGCTTGAAGTCTTTGAACTTGGGGTTTAATAGGCTAAATGGAAGTATCCCAATTGAGCTTGCAGGGCTGCAGAGGATTTCTGTTATTCGATTGGGGCAAAATTCTATCAGTGGGACGATACCGGTCGAGTTTGGGAGGATTGAATATCTTCAAGTTCTTGATTTGCACAATCTCAATCTTAGTGGTGAAATCCCTAGTGATTTAAGCAATTGCAGGTTTCTGCTAGAGCTGGATGTTTCAGGCAATGCTTTAATGGGAGAAATTCCACAAACCCTTTATAACATGTCATATCTTTTAGTTCTTGACCTCCATCATAACCTCCTCAATGGAAGTATACCATCCACTCTTGGAAATTTGTCAAAAATCCAAATCTTGGATCTCTCAGAAAATTCACTATCCGGGTCGATCCCACTTTCCCTTGGCAACTTATCAAATTTAACTCATTTTAACCTCTCCAACAACAACCTCTCTGGTCCAATCCCTTCAATCCCCACCATCAATAAATTCGGGTCTGCACCATTTCTTGATAATCCAGGGCTGTGCGGTACACCTCTGGACACACCCTGCTCGGCCAATGGCACAACTCCGGGTTCCACAAGAGCCCGATTGCTTAGTGTTTCCTCCATTGTAGCCATTGTTGCTGCTGCAGTAATCCTTACCGGTGTTATAGCGATAACCATCATCAACATGAAGGCCCGAACGAGGAGAAGAGAGGAAGAGAATATAGTTATAGAAAGCACCCCTTTAGGCTCAACCGATTCGGATTTCATTGTAGGGAAATTGGTTCTCTTCAGTAAAAGTTTACCCTCAAAGTACGAGGACTGGGAAGCGGGCACAAAAGCCTTGCTCGACAAGAAGTGCCTCATTGGCCGGGGCTCGATCGGATCTGTTTACCGAACAAGTTTTGAAGGTGGGGTATCGATCGCAGTAAAGAAACTTGAGAATCTTGGAAGAATGAGGAACCAAGAAGATTTCGAGCACGAGATTGGACGGTTGGGAAACTTCCAACACCCAAATCTTGTGGCTTTCCAAGGTTATTATTGGTCCTCCAGTCTGCAACTGATTCTATCTGAATTCGTTCAAAATGGGAATCTTTATGATAATCTACACGGCCTTGATTATCCAGGAACTAGTACTAGTGTTGGTAATATCGAATTAAATTGGGACCGTCGATTCAATATTGCTTTACGTACTGCGAGAGCATTAATGTACCTCCACCACGACTGTAAGCCTCCGGTTATTCATCTCAACATTAAGTCCACTAATATCCTATTAGACGAAAACTACGAACCGAAATTATCAGATTATGGGCTGGGGAAATTACTTCCCCTTTTGGATAATGCTGTTTTAACCAAATTTCACAATGCAGTTGGGTACATTCCACCGGAGTTGGCTCAGAGTTTGAGAATTAGCGATAAATGCGATGTTTATAGCTTTGGGGTGATTTTGTTGGAGCTTGTAACGGGACGGAAGCCGGTTGAGAGCCCGGTGGCAAATGAGGTGGTGGTTTTGTGTGAATATGTTAGGAGTTTGATAGAGAGGGGGAATGCTTCGGATTGCTTTGATAGAAGTTTGCGCGGTTTTCAAGAAAATGAGCTGATTCAAGTTATGAAGTTGGGTTTGATCTGCACTAATGAAATGCCTTCGAGGCGGCCTAGTATGGCCGAGGTTGTTCAGGTCCTCGAGTCGATTAGGTCTGGATTGGGTGAATAGAAAGTGGGATTAAGGTTGGGATTGGATTGGATCAGATCGGATCGGTGTGGAATTAGCAGTTTGTTGTACAAGAAGAGAGGGGAAATTGTGGTGTTTGTCTGGAGGGAGAGTCGGGGGTGGATGGGGGAAAATACAAAAAGTAGTGAGAAACTGTTAGTGTTCTAG

Network for GWHGAAZE006166

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	29	67	5.80E-08
PF00069.26	Pkinase	597	870	4.00E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.865
	SRR3591706	second leaf	9.166
	SRR3591707	mature leaf	5.743
	SRR3591708	Shoot apex	7.464
	SRR3591709	Stem	1.781
	SRR3591710	White floral bud	1.868
	SRR3591711	White flower	2.511
	SRR3591712	Green floral bud	3.776
	SRR3591713	Yellow flower	0.380
SRP173429	SRR8316895	Juvenile bud stage	2.967
	SRR8316896	Juvenile bud stage	2.102
	SRR8316897	Juvenile bud stage	1.376
	SRR8316894	Third green stage	1.537
	SRR8316900	Third green stage	3.813
	SRR8316901	Third green stage	2.935
	SRR8316898	Complete white stage	0.245
	SRR8316899	Complete white stage	3.335
	SRR8316903	Complete white stage	0.751
	SRR8316902	Silver flowering stage	0.230
	SRR8316904	Silver flowering stage	0.398
	SRR8316905	Silver flowering stage	0.121
	SRR8316906	Gold flowering stage	0.326
	SRR8316907	Gold flowering stage	0.225
	SRR8316908	Gold flowering stage	0.270
SRP132670	SRR6706286	Control	2.528
	SRR6706287	Light intensity 50%	2.552
	SRR6706288	Light intensity 20%	2.915
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.585
	CNS0095593	Slightly white alabastrum(diploid) 2	3.033
	CNS0095594	Slightly white alabastrum(diploid) 3	1.812
	CNS0095595	Whole white alabastrum(diploid) 2	1.843
	CNS0095596	Whole white alabastrum(diploid) 3	0.939
	CNS0095597	Whole white alabastrum(diploid) 4	2.101
	CNS0095598	Silvery flower (diploied) 1	1.981
	CNS0095599	Silvery flower (diploied) 2	2.110
	CNS0095600	Silvery flower (diploied) 3	1.243
	CNS0095601	Golden flower (diploid) 1	2.045
	CNS0095602	Golden flower (diploid) 2	1.359
	CNS0095603	Golden flower (diploid) 3	1.406
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.081
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.267
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.275
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.367
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.580
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.506
	CNS0095610	Silvery flower (tetraploid) 1	0.617
	CNS0095611	Silvery flower (tetraploid) 2	0.743
	CNS0095612	Silvery flower (tetraploid) 3	0.949
	CNS0095613	Golden flower (tetraploid) 1	0.250
	CNS0095614	Golden flower (tetraploid) 2	0.522
	CNS0095615	Golden flower (tetraploid) 3	0.551
CRA001975	CRR073297	Stem 1	3.871
	CRR073298	Stem 2	4.188
	CRR073299	Stem 3	3.609
	CRR073300	Leaf 1	4.466
	CRR073301	Leaf 2	3.802
	CRR073302	Leaf 3	2.854
	CRR073303	Juvenile bud 1	1.490
	CRR073304	Juvenile bud 2	1.831
	CRR073305	Juvenile bud 3	1.984
	CRR073306	Third green 1	0.842
	CRR073307	Third green 2	1.030
	CRR073308	Third green 3	0.372
	CRR073309	Second white 1	0.357
	CRR073310	Second white 2	0.271
	CRR073311	Second white 3	0.053
	CRR073312	Silver flowering 1	0.267
	CRR073313	Silver flowering 2	0.187
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.552
	CRR073316	Gold flowering 2	4.443
	CRR073317	Gold flowering 3	2.549
	CRR073318	Tawny withering 1	3.692
	CRR073319	Tawny withering 2	2.432
	CRR073320	Tawny withering 3	2.395