Gene detail

Detail information of GWHGAAZE005608

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP06699.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|C0LGI2\|Y1677_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At1g67720 (Precursor)
trEMBL	tr\|A0A068UEW2\|A0A068UEW2_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06699.1}
TAIR10	AT2G37050.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	10669009	10676055	+
GWHAAZE00000002	mRNA	10669009	10676055	+
GWHAAZE00000002	exon	10669009	10669084	+
GWHAAZE00000002	exon	10670776	10671304	+
GWHAAZE00000002	exon	10671814	10672319	+
GWHAAZE00000002	exon	10672577	10672709	+
GWHAAZE00000002	exon	10673076	10673147	+
GWHAAZE00000002	exon	10673237	10673332	+
GWHAAZE00000002	exon	10673404	10673475	+
GWHAAZE00000002	exon	10673617	10673685	+
GWHAAZE00000002	exon	10674190	10674344	+
GWHAAZE00000002	exon	10674429	10674632	+
GWHAAZE00000002	exon	10675009	10675077	+
GWHAAZE00000002	exon	10675288	10675345	+
GWHAAZE00000002	exon	10675449	10675584	+
GWHAAZE00000002	exon	10675717	10676055	+
GWHAAZE00000002	CDS	10669009	10669084	+
GWHAAZE00000002	CDS	10670776	10671304	+
GWHAAZE00000002	CDS	10671814	10672319	+
GWHAAZE00000002	CDS	10672577	10672709	+
GWHAAZE00000002	CDS	10673076	10673147	+
GWHAAZE00000002	CDS	10673237	10673332	+
GWHAAZE00000002	CDS	10673404	10673475	+
GWHAAZE00000002	CDS	10673617	10673685	+
GWHAAZE00000002	CDS	10674190	10674344	+
GWHAAZE00000002	CDS	10674429	10674632	+
GWHAAZE00000002	CDS	10675009	10675077	+
GWHAAZE00000002	CDS	10675288	10675345	+
GWHAAZE00000002	CDS	10675449	10675584	+
GWHAAZE00000002	CDS	10675717	10676055	+

Transcript Sequence
>GWHTAAZE005616 ATGGAGATTAGGGTTCTTCTCGTTCTCTTACTTCCTCTCTCTCTTCTTCTCATGGATTTCATCACTGCTCAGCCAGGTTTTGTAAGTTTGGATTGTGGAGGTACTCAAAATTTCACCGATGAGCTTGGTCTTGATTGGATTCCTGATAATAAGATCCAAGGGGAAACGGCTAGTATATCTGCAGCAAATGAGACAAGGAAACAATATATGTCGGTGAGATATTTCCCCGCAGATAACATGAAGTATTGTTACACCCTTAATGTCATAACTAGAACTAGGTACCTTATACGAGCGACCTTCTTGTATGGCAATTTCGATAAAAATAACGTTTACCCAAAGTTTGACATCTCATTTGGGCCAACTCCGTGGGCAACAATTGTCATTTCGGATGCTAATACAATAGAGGCTCAAGAGTTAATCTTTTTGGCTTCAGATCCGACTATAAGTGTGTGTTTATCCAATGCTACGACTGGACAACCGTTCATTTCTACCCTTGAGCTCCGACAATTTAATGGTTCAATCTACTATACAGAATTTGAGAAACAATTCTTTCTGAGTGTCTCCGCAAGAATAAATTTTGGGGCAGATAGTGAAGCTCCAGTCAGGTATCCAGATGACCCATTTGATAGATTATGGCAATCGGATTCTTTAAAGAAGGCAAATTACCTTGTTGATGTTGCTTCTGGAACTGAAAAAGTATCAACCGGATTACCGATTGATATTACCAGTGGTGAAAAACCACCTCAAAAAGTGATGCAAACAGCTGTAGTTGGCAGAAATGGAACGTTAACATACCGCTTGAACTTGGACGGTTTTCCAGGCTTTGGTTGGGCATTCACCTACTTTGCTGAAATTGAAGATTTAGGTCCAACTAAGACCAGAAAGTTCAGGGTATCACTCCCGGGAAACAATGACATAAGTAAAAGTGTTGTTAACATCCAAGAAAATGCTCACGGAAAATACCGTTTGTACGAGCCAGGATACTATAACCTTACCTTCCCCTTTGTCTTAAATTTTAGAATTACCAAAACGGTTGATTCCACGGAGGGTCCCCTCTTGAATGCAATGGAGATAAACAAGTACTTGCGGAAACTTGAGGGTTCTTCGGATGGACCGGTTGTTGCTAGTATAGTCTCACTCTATGCACCAGCAGATTGGGCACAAGAAGGTGGTGATCCGTGCCTGCCGGTTCCTTGGTCTTGGGTAGAGTGCAACTCAGATCCCCAGCCAAGGATTGTTTCAGTCAAATTATCTGGGAAGAATTTGACAGGGAGTATTCCTTCAGACTTGACGAAGTTGAGCAGCTTAGAGGAGTTTCAATACTTGCACTCTTCTGTCTGCAGATGGCTTGATGGCAATTCATTGACTGGTTCAATTCCTGATTTCAGTGGGTCCACAAACTTGAAGACCATACATCTCGAGAACAATCGGTTGACTGGTGAGGTGCCTTCCTCCTTAGCAGGCCTACCAAATTTGAAAGAACTATATTTAGAGAATAACTTGTTGTCTGGGACCGTGCCAGCTGGCCTTCTGAAAAAGAATATGGCTTTGAACTACACTGGAAACATTGACCTTCGTAGAGGAAGTAGCGAAGGGAACCATAATAAAATTATTATTGGATCATCGGTTGGGGCTGCCGGTCTGCTTATAGCTACTATAATCTCTTGCCTCTTAATGCGCAAAGTAAAGAAGAAATATCCTAAGCAAGAACAACTTGGACATGCGATGCCTACTCAAAGGAGAGATTCTTACTTGGGTGGATCTGCAACAGAAGCTGCAAATTGCTTTACATTATCTGAACTTAAAGATGCGACAAAGGATTTGGAGAAGAAAGTTGGCTCGGGAGGATTTGGGGTTGTGTACTATGGAAAACTAGCTGATGGAAAGGAAATTGCCGTCAAAGTTCTGACCAGACCTTTAACACGAGAGCGGAGTATTAGTTGGATAAAGCGGCTTGAGATTGCTGAAGATGCTGCAAAAGATGGAGCTTCCCATGTATCAAGTATAGTTCGAGGCACTGTTGGGTATCTAGATCCAGAGTATTATATCTCCCAGCAATTGACAGATAAAAGTGATGTTTACAGTTTTGGGGTCATTCTTCTTGAGCTGATATCTGGGCAAGAGGCAATATCTAGCGAGAACTTTGGTGTTAATTGCCGTAACATAGTCCAGTGGGCAAAATTACACATTGAGAGCGGGGACATTCAAGGGATCATAGACCCATTTCTGGGCAATGAATACGACATCCAATCAATGTGGAAAATAGCCGAAAAAGCATTGATGTGTGTGCAGCCTCATGGGAGTATGAGGCCATCAATATCAGAAGTGATTAAGGAGATACAAGATGCGATCTCCATTGAAAGGGGAGCAGATGCAGTGAGAGAAGGTAGCTCTGACGAGATATCGAGGCATTCTATGCATTCTTCCTTGAACATGGGTGGTTCCCTCGATTTAGGTGTGTGCGACCACTACTTGTCAATAGACGAGTCTATAACACGGCCAACCGCTCGATAA

Network for GWHGAAZE005608

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	30	359	1.00E-77
PF13855.7	LRR_8	462	502	2.60E-07
PF07714.18	PK_Tyr_Ser-Thr	657	709	2.30E-05

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-I-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	69.761
	SRR3591706	second leaf	43.421
	SRR3591707	mature leaf	34.548
	SRR3591708	Shoot apex	53.157
	SRR3591709	Stem	66.473
	SRR3591710	White floral bud	66.290
	SRR3591711	White flower	62.719
	SRR3591712	Green floral bud	68.563
	SRR3591713	Yellow flower	43.665
SRP173429	SRR8316895	Juvenile bud stage	31.776
	SRR8316896	Juvenile bud stage	38.076
	SRR8316897	Juvenile bud stage	18.418
	SRR8316894	Third green stage	16.179
	SRR8316900	Third green stage	36.224
	SRR8316901	Third green stage	33.711
	SRR8316898	Complete white stage	11.612
	SRR8316899	Complete white stage	51.652
	SRR8316903	Complete white stage	24.906
	SRR8316902	Silver flowering stage	10.806
	SRR8316904	Silver flowering stage	16.693
	SRR8316905	Silver flowering stage	7.640
	SRR8316906	Gold flowering stage	21.962
	SRR8316907	Gold flowering stage	19.150
	SRR8316908	Gold flowering stage	21.693
SRP132670	SRR6706286	Control	18.343
	SRR6706287	Light intensity 50%	22.488
	SRR6706288	Light intensity 20%	23.257
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.507
	CNS0095593	Slightly white alabastrum(diploid) 2	27.173
	CNS0095594	Slightly white alabastrum(diploid) 3	24.963
	CNS0095595	Whole white alabastrum(diploid) 2	23.864
	CNS0095596	Whole white alabastrum(diploid) 3	19.384
	CNS0095597	Whole white alabastrum(diploid) 4	24.033
	CNS0095598	Silvery flower (diploied) 1	31.871
	CNS0095599	Silvery flower (diploied) 2	28.617
	CNS0095600	Silvery flower (diploied) 3	36.137
	CNS0095601	Golden flower (diploid) 1	28.364
	CNS0095602	Golden flower (diploid) 2	29.920
	CNS0095603	Golden flower (diploid) 3	28.838
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.836
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.264
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.821
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.438
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.203
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.881
	CNS0095610	Silvery flower (tetraploid) 1	47.221
	CNS0095611	Silvery flower (tetraploid) 2	48.224
	CNS0095612	Silvery flower (tetraploid) 3	33.826
	CNS0095613	Golden flower (tetraploid) 1	14.814
	CNS0095614	Golden flower (tetraploid) 2	30.876
	CNS0095615	Golden flower (tetraploid) 3	13.600
CRA001975	CRR073297	Stem 1	25.720
	CRR073298	Stem 2	21.856
	CRR073299	Stem 3	14.186
	CRR073300	Leaf 1	24.756
	CRR073301	Leaf 2	20.822
	CRR073302	Leaf 3	12.171
	CRR073303	Juvenile bud 1	16.722
	CRR073304	Juvenile bud 2	11.185
	CRR073305	Juvenile bud 3	21.676
	CRR073306	Third green 1	2.793
	CRR073307	Third green 2	3.639
	CRR073308	Third green 3	3.804
	CRR073309	Second white 1	3.227
	CRR073310	Second white 2	3.543
	CRR073311	Second white 3	2.218
	CRR073312	Silver flowering 1	0.446
	CRR073313	Silver flowering 2	0.727
	CRR073314	Silver flowering 3	0.853
	CRR073315	Gold flowering 1	7.079
	CRR073316	Gold flowering 2	12.413
	CRR073317	Gold flowering 3	6.206
	CRR073318	Tawny withering 1	15.052
	CRR073319	Tawny withering 2	11.498
	CRR073320	Tawny withering 3	14.612