Gene detail

Detail information of GWHGAAZE005313

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009793754.1	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Nicotiana sylvestris]
Swissprot	tr\|Q9LRT1\|Y3804_ARATH	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 (Precursor)
trEMBL	tr\|B9IGT6\|B9IGT6_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:EEF05433.2}
TAIR10	AT3G56370.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5905403	5910577	+
GWHAAZE00000002	mRNA	5905403	5910577	+
GWHAAZE00000002	exon	5905403	5905409	+
GWHAAZE00000002	exon	5907586	5908996	+
GWHAAZE00000002	exon	5909125	5910577	+
GWHAAZE00000002	CDS	5905403	5905409	+
GWHAAZE00000002	CDS	5907586	5908996	+
GWHAAZE00000002	CDS	5909125	5910577	+

Transcript Sequence
>GWHTAAZE005319 ATGGCATGTCCCTTCATTGCAGCAGAGTCGCTGGACCCTGCTTTCAACGACGACGTTTTGGGCCTAATCGTCTTCAAAACCGGACTCAGCGACCCCCAATCGAAACTCTCTTCATGGAACGAAGATGACTACACTCCCTGTAACTGGACCGGCGTTAAATGCGACCGCCGGAATAATCGGGTCACCGACCTCAACCTCTCCGGCTTCTCCCTCTCCGGCCATATTGGCCGGAGCCTCCTAAAGTTAGATTCTCTTCGAACCCTTTCTCTGGCCAACAACAATTTCACCGGAACATTAAACCCAATTCTCACCCAAATTCAAAATTTGCGATTTATCGATTTTAGTCAAAATGGCCTCTCCGGTTCAATCCCCGAGGAATTTTTTGATCAATGCCGGTCACTGATTGCAATTTCGCTTTCGAAAAATTATCTCACTGGCTCGGTTCCGCAATCTTTAAGTTCGTGCTCAACACTTGAGAGGGTTAATTTTTCCTCTAATTTTCTTTCGGGTACATTACCCACTGGAATTTGGTCTTTGATTGGACTTAAATCACTTGATTTCTCTGATAATTTGTTTGAGGGTGAGATTCCACAGGGAATTCATAATCTATATGACTTGAGGGTTCTAAGTTTAAAGAAGAACAAGCTTACCGGACCTTTGCCGGGGGAAATAGGAAGGTGTTTGCTTGTGAGATCACTTGATTTTAGCGCGAATTCTTTATCTGGGTTCCTTCCTATATCAATGCAGAAGCTTAGTTTGTGCACTTCTTTAAGTATATCACACAATTCTTTCACCGGAGAACTACCGGAGTGGATTGGAGATATGAAAAGCCTGTGGAGTTTGGATATTTCAGCCAACAATTTTTCGGGTCGAGTTCCTAATACAATAGGAGGTCTTCAATACTTGAAAGAATTAAATTTATCTAGGAACCAGTTTACCGGAGAATTGCCGAATTCATTGGCAAATTGTGTTAATTTATTGTCGTTAGATGTTAGCCTAAATTTATTGACTGGTAATCTTCCTTCATGGGCTTTTGGGTTAGGCTTGAAAACTCTCTCTCTTTCAAGTAACAGATTTAGTGGAAGCATAGTGTATCCTTCTATGGCATTGATAGGAGATATTGAGGTCTTGGATTTATCTTCTAACGTGTTTTCTGGTGAAATCCCATTAGGCATTGGGAATTTCAGTAGCTTGCAGTTGTTGAATATGTCAAGAAATTCTCTAACCGGTTATATTCCTACAAGCATAGGTGAATTAAAAGGCCCAAATGTCATTGATTTGAGTTACAATCGGGTGAATGGAACCATTCCCTCAGAAATTGGACGACTTGTTTCACTCCAAGAACTGAGGCTGGAGAGGAATTTCTTGACTGGGATTATTCCGACTCAAATTCAAAATTGTTCCTCTCTAAAAACTTTGATTCTGTCGAACAACAATCTCACAGGCCAGATTCCTCTGACTATAGTGAACCTCACTGACCTTGAGATTGTCGATTTGTCCTTTAACCACCTCTCTGGCGGCTTACCCAAAGACCTAACAAACCTTTCGAACCTCGTATCCTTTAATATCTCACACAATGACCTACAAGGCGAGTTACCCGTTGGTGGCTTCTTCAACACAATCCCTCTCTCATCGGTAGCTTTCAATCCGGCCTTATGTGGCTCGATTGTTAAGCATTCCTGCCCAGCCGTTCATCCCAAGCCCATTGTTCTTAACCCGAATTCTTCCTCAGACTCCGCCCATAAAGGTTCTCTCTTTCCTAATCTCCATCACAAGAAAATCATACTAAGTATATCTGCCCTCATTGCCATTGGTGCAGCTGTGCTAATAGCCCTGGGTGTATTAACTGTCTCTGTGCTCAATTTGCGTGTACGCTCTTCGATGTCACGCTCCACTGCACCCTTAGCTTTATCTGGTGGGGATGATTACAGCCAATCGCATACCCCCGAGTCGAATTATGGCAAGCTTGTGATGTTCTCTGGTGAGGTTGACTTTGGTGATGGAGCTAATGCGTTGCTCAACAAGGACTCTGAACTTGGGCGTGGAGGCTTCGGTGCGGTCTACCACACGGTTCTTAGAGATGGACGCTCAGTTGCCATCAAGAAGCTAAACGTTACTAGTTTGATGAAGTCCCAAGGAGATTTCGATAAAGAAGTTAAGAAACTCGGAAAGATTAGGCACGGGAACCTTGTGACACTTGATGGGTATTACTGGACTCCGTCGTTACAGCTTCTTATTACTGAATATGTTTGCAACGGGAGCTTATACAAGAATCTCCACGAGGGAAAGTCGAATAACGGGATCTCTTGGCAACAAAGGTTCAACGTAATTCTTGGGACAGCAAGAGGGTTGTCCCATTTGCACAAACTCGGCGTAATTCACTACAATTTAAAGTCGACTAATGTTCTATTAGACGATTTTGGTGAACCGAAAGTTGGGGACTTTGGCTTGGCTAGGCTGTTGCCTGTTTTAGACCGTTGTATTTTAAGCAGCAAGATCCAGAGTGCACTCGGGTACATGGCACCCGAGTTTTCTTGTCAAACAGTGAAGATAACGGAAAAATGTGATGTGTATGCATTCGGGGTGTTAACTTTAGAAGTGGTAACGGGGAAGAGACCTGTTGAATATATGGAGGACGATGTGGTTGTGCTTTGTGATATGGTAAGGGACGCATTGGAGCAAGGGAGGGCCGAGGAATGTGTTGATCAGAACTTAAACGGTAATTTTCGCGTAGAAGAAGCTATCCCTGTAATAAAACTCGGTTTGATATGTGCGTCTCAAGTACCATCAAACCGTCCGGATATGGAAGAGGTGATCAAGATTTTAGAATTGATACAATGTCCCTCGGAAAGCCAAGAGGAGTTGGAATGA

Network for GWHGAAZE005313

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	16	55	1.40E-12
PF13855.7	LRR_8	255	312	3.20E-07
PF07723.14	LRR_2	349	362	0.63
PF13855.7	LRR_8	445	504	9.20E-09
PF07714.18	PK_Tyr_Ser-Thr	674	899	1.50E-39

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.038
	SRR3591706	second leaf	8.086
	SRR3591707	mature leaf	1.706
	SRR3591708	Shoot apex	13.865
	SRR3591709	Stem	13.083
	SRR3591710	White floral bud	1.339
	SRR3591711	White flower	1.215
	SRR3591712	Green floral bud	2.541
	SRR3591713	Yellow flower	0.068
SRP173429	SRR8316895	Juvenile bud stage	2.747
	SRR8316896	Juvenile bud stage	2.461
	SRR8316897	Juvenile bud stage	1.169
	SRR8316894	Third green stage	1.091
	SRR8316900	Third green stage	1.565
	SRR8316901	Third green stage	1.206
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.917
	SRR8316903	Complete white stage	0.240
	SRR8316902	Silver flowering stage	0.048
	SRR8316904	Silver flowering stage	0.140
	SRR8316905	Silver flowering stage	0.021
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.123
	SRR8316908	Gold flowering stage	0.053
SRP132670	SRR6706286	Control	1.301
	SRR6706287	Light intensity 50%	1.112
	SRR6706288	Light intensity 20%	1.041
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.129
	CNS0095593	Slightly white alabastrum(diploid) 2	1.944
	CNS0095594	Slightly white alabastrum(diploid) 3	1.244
	CNS0095595	Whole white alabastrum(diploid) 2	0.709
	CNS0095596	Whole white alabastrum(diploid) 3	0.638
	CNS0095597	Whole white alabastrum(diploid) 4	1.035
	CNS0095598	Silvery flower (diploied) 1	0.806
	CNS0095599	Silvery flower (diploied) 2	0.344
	CNS0095600	Silvery flower (diploied) 3	0.562
	CNS0095601	Golden flower (diploid) 1	0.411
	CNS0095602	Golden flower (diploid) 2	0.652
	CNS0095603	Golden flower (diploid) 3	0.599
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.290
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.282
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.883
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.006
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.312
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.668
	CNS0095610	Silvery flower (tetraploid) 1	0.884
	CNS0095611	Silvery flower (tetraploid) 2	0.516
	CNS0095612	Silvery flower (tetraploid) 3	0.302
	CNS0095613	Golden flower (tetraploid) 1	0.043
	CNS0095614	Golden flower (tetraploid) 2	0.577
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	4.953
	CRR073298	Stem 2	4.401
	CRR073299	Stem 3	7.401
	CRR073300	Leaf 1	2.256
	CRR073301	Leaf 2	2.298
	CRR073302	Leaf 3	2.378
	CRR073303	Juvenile bud 1	1.163
	CRR073304	Juvenile bud 2	0.751
	CRR073305	Juvenile bud 3	1.627
	CRR073306	Third green 1	0.458
	CRR073307	Third green 2	0.190
	CRR073308	Third green 3	1.092
	CRR073309	Second white 1	0.182
	CRR073310	Second white 2	0.104
	CRR073311	Second white 3	0.394
	CRR073312	Silver flowering 1	0.130
	CRR073313	Silver flowering 2	0.341
	CRR073314	Silver flowering 3	0.208
	CRR073315	Gold flowering 1	1.445
	CRR073316	Gold flowering 2	2.574
	CRR073317	Gold flowering 3	2.376
	CRR073318	Tawny withering 1	20.502
	CRR073319	Tawny withering 2	9.221
	CRR073320	Tawny withering 3	26.952