Detail information of GWHGAAZE005294


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003632548.10PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X1 [Vitis vinifera]
Swissprottr|C0LGD7|Y1684_ARATH0Probable LRR receptor-like serine/threonine-protein kinase At1g06840 (Precursor)
trEMBLtr|A0A061EPY9|A0A061EPY9_THECC0LRR receptor-like serine/threonine-protein kinase, putative {ECO:0000313|EMBL:EOY04394.1}
TAIR10AT1G06840.10Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene56508125658787-
GWHAAZE00000002mRNA56508125658787-
GWHAAZE00000002exon56586885658787-
GWHAAZE00000002exon56583995658549-
GWHAAZE00000002exon56575775657648-
GWHAAZE00000002exon56573875657458-
GWHAAZE00000002exon56568305656973-
GWHAAZE00000002exon56566665656737-
GWHAAZE00000002exon56564505656521-
GWHAAZE00000002exon56557405655814-
GWHAAZE00000002exon56553905655458-
GWHAAZE00000002exon56550325655100-
GWHAAZE00000002exon56548125654883-
GWHAAZE00000002exon56546145654700-
GWHAAZE00000002exon56541365654204-
GWHAAZE00000002exon56533365653850-
GWHAAZE00000002exon56528375652995-
GWHAAZE00000002exon56523595652642-
GWHAAZE00000002exon56521115652162-
GWHAAZE00000002exon56515255651877-
GWHAAZE00000002exon56508125651159-
GWHAAZE00000002CDS56586885658787-
GWHAAZE00000002CDS56583995658549-
GWHAAZE00000002CDS56575775657648-
GWHAAZE00000002CDS56573875657458-
GWHAAZE00000002CDS56568305656973-
GWHAAZE00000002CDS56566665656737-
GWHAAZE00000002CDS56564505656521-
GWHAAZE00000002CDS56557405655814-
GWHAAZE00000002CDS56553905655458-
GWHAAZE00000002CDS56550325655100-
GWHAAZE00000002CDS56548125654883-
GWHAAZE00000002CDS56546145654700-
GWHAAZE00000002CDS56541365654204-
GWHAAZE00000002CDS56533365653850-
GWHAAZE00000002CDS56528375652995-
GWHAAZE00000002CDS56523595652642-
GWHAAZE00000002CDS56521115652162-
GWHAAZE00000002CDS56515255651877-
GWHAAZE00000002CDS56508125651159-
Transcript Sequence

Network for GWHGAAZE005294

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.13LRRNT_233701.00E-08
PF13855.7LRR_81512115.40E-07
PF00069.26Pkinase6277744.10E-31
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-VIII-1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.139
SRR3591706second leaf0.159
SRR3591707mature leaf0.486
SRR3591708Shoot apex0.238
SRR3591709Stem1.357
SRR3591710White floral bud5.120
SRR3591711White flower4.844
SRR3591712Green floral bud4.481
SRR3591713Yellow flower2.084
SRP173429 SRR8316895Juvenile bud stage 0.673
SRR8316896Juvenile bud stage 0.961
SRR8316897Juvenile bud stage 0.172
SRR8316894Third green stage 0.429
SRR8316900Third green stage 0.574
SRR8316901Third green stage 0.744
SRR8316898Complete white stage 0.005
SRR8316899Complete white stage 0.395
SRR8316903Complete white stage 0.217
SRR8316902Silver flowering stage0.101
SRR8316904Silver flowering stage0.076
SRR8316905Silver flowering stage0.048
SRR8316906Gold flowering stage 0.299
SRR8316907Gold flowering stage 0.336
SRR8316908Gold flowering stage 0.262
SRP132670SRR6706286Control0.370
SRR6706287Light intensity 50%0.330
SRR6706288Light intensity 20%0.438
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.464
CNS0095593Slightly white alabastrum(diploid) 20.269
CNS0095594Slightly white alabastrum(diploid) 30.169
CNS0095595Whole white alabastrum(diploid) 20.403
CNS0095596Whole white alabastrum(diploid) 30.184
CNS0095597Whole white alabastrum(diploid) 40.365
CNS0095598Silvery flower (diploied) 10.124
CNS0095599Silvery flower (diploied) 20.522
CNS0095600Silvery flower (diploied) 30.314
CNS0095601Golden flower (diploid) 10.636
CNS0095602Golden flower (diploid) 20.430
CNS0095603Golden flower (diploid) 30.436
CNS0095604Slightly white alabastrum(tetraploid) 10.593
CNS0095605Slightly white alabastrum(tetraploid) 20.282
CNS0095606Slightly white alabastrum(tetraploid) 30.816
CNS0095607Whole white alabastrum(tetraploid) 10.409
CNS0095608Whole white alabastrum(tetraploid) 20.193
CNS0095609Whole white alabastrum(tetraploid) 30.570
CNS0095610Silvery flower (tetraploid) 10.211
CNS0095611Silvery flower (tetraploid) 20.132
CNS0095612Silvery flower (tetraploid) 30.281
CNS0095613Golden flower (tetraploid) 10.042
CNS0095614Golden flower (tetraploid) 20.142
CNS0095615Golden flower (tetraploid) 30.022
CRA001975CRR073297Stem 11.117
CRR073298Stem 20.578
CRR073299Stem 31.230
CRR073300Leaf 10.433
CRR073301Leaf 20.636
CRR073302Leaf 30.306
CRR073303Juvenile bud 10.162
CRR073304Juvenile bud 20.001
CRR073305Juvenile bud 30.145
CRR073306Third green 10.238
CRR073307Third green 20.158
CRR073308Third green 30.252
CRR073309Second white 10.148
CRR073310Second white 20.303
CRR073311Second white 30.140
CRR073312Silver flowering 10.041
CRR073313Silver flowering 20.295
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.399
CRR073316Gold flowering 20.592
CRR073317Gold flowering 30.304
CRR073318Tawny withering 10.337
CRR073319Tawny withering 20.317
CRR073320Tawny withering 30.575