Gene detail

Detail information of GWHGAAZE005271

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP08081.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LT96\|Y5977_ARATH	2E-180	Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBL	tr\|A0A068UHX6\|A0A068UHX6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_30 {ECO:0000313\|EMBL:CDP08081.1}
TAIR10	AT1G79620.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5237310	5240897	+
GWHAAZE00000002	mRNA	5237310	5240897	+
GWHAAZE00000002	exon	5237310	5237380	+
GWHAAZE00000002	exon	5237474	5237548	+
GWHAAZE00000002	exon	5237672	5237743	+
GWHAAZE00000002	exon	5238022	5238183	+
GWHAAZE00000002	exon	5238263	5238337	+
GWHAAZE00000002	exon	5238412	5238483	+
GWHAAZE00000002	exon	5238602	5238673	+
GWHAAZE00000002	exon	5238769	5238837	+
GWHAAZE00000002	exon	5238933	5239007	+
GWHAAZE00000002	exon	5239102	5239173	+
GWHAAZE00000002	exon	5239311	5239445	+
GWHAAZE00000002	exon	5239544	5240016	+
GWHAAZE00000002	exon	5240106	5240252	+
GWHAAZE00000002	exon	5240394	5240533	+
GWHAAZE00000002	exon	5240613	5240897	+
GWHAAZE00000002	CDS	5237310	5237380	+
GWHAAZE00000002	CDS	5237474	5237548	+
GWHAAZE00000002	CDS	5237672	5237743	+
GWHAAZE00000002	CDS	5238022	5238183	+
GWHAAZE00000002	CDS	5238263	5238337	+
GWHAAZE00000002	CDS	5238412	5238483	+
GWHAAZE00000002	CDS	5238602	5238673	+
GWHAAZE00000002	CDS	5238769	5238837	+
GWHAAZE00000002	CDS	5238933	5239007	+
GWHAAZE00000002	CDS	5239102	5239173	+
GWHAAZE00000002	CDS	5239311	5239445	+
GWHAAZE00000002	CDS	5239544	5240016	+
GWHAAZE00000002	CDS	5240106	5240252	+
GWHAAZE00000002	CDS	5240394	5240533	+
GWHAAZE00000002	CDS	5240613	5240897	+

Transcript Sequence
>GWHTAAZE005277 GGATTGTCAAGTCAGAACCTTGTAGGTAAACTGAGTGGTGACATTGGGGGACTCGCTGAATTGATATCCTTGGACCTATCCTTCAACAAAGGCCTCACAGGTACCCTCTCAGCAGAACTAGGAAACCTGAAAAAGCTCAGCATACTAATCCTAGCTGGCTGCGGCTTCACTGGGAGTATTCCAGCTGAATTGGGCAATCTTTCAGAGCTATCATTTTTAGCTCTGAATACGAACAAATTGACTGGTGGAATACCTCCTTCTCTGGGCTATCTCTCAAAGCTCTACTGGCTGGACCTTGCAGAAAATCAGTTGACAGGATCTATTCCTGTTTCAACAGCCACTGCCCCGGGATTGGACATGCTTAAGAAGGCAAAACACTTCCATTTCAATAAAAACCAGCTTTCAGGACCAATTCCATCAAGCCTTTTCAGCTCCGACATGGTACTGATACACGTCCTGTTTGACGCAAATCAATTAACTGGGGGAATTCCATCTACAATAGGACTTGTTCAGACACTCGAGGTTCTTCGGCTTGACAGAAATTCCTTCACAAACTTTGTACCACTAAGCCTCAACAATCTCACTAGTCTCGTTGAATTGAATTTAGCACAAAATAACCTCACTGGGCCATATCCAGACTTGACTGGATTGAACTCTCTCAATTATGTGGATTTGAGCAACAACTCCTTTATAGAATCAGAAGCTCCGGCTTGGTTCTCAACCTTACCATCACTTACCACTTTGGTTATAGAATATGGGTCACTTCACGGAAAGCTTCCACCAACAGTTTTCAGTTTCCCGCAGATTCAACAAGTGAAACTAAGGAACAATGCATTCAATGATACCTTGAATATGGGTAGCGGCATTAGCGATCAACTTCAACTTGTTGATTTGGAGAACAACCAGATATCCGCGCTAACAGTGGGTTCTGGATACAAAAATACATTAATGTTGAATGGGAACCCTGTATGCAGCACTGGTCTCTCAAACACAGAGTACTGTCAACTTCAACAACCAAATTCAAAACCTTATTCTACTAGCGTAGCTCACTGTGGGGATAAATCGTGTGCATTGGACCAGAAAATAAACCCTCAGAGCTGTGACTGTGCTTATCCATATGAAGGGACATTGTACTTCAGAGGACCCTCCTTTAGGGAGTTGTCTAATGCAAATATGTTTCATTCACTAGAAATGAGCCTGTGGACCAAATTGGGGCTCACTCCTGGTTCAGTTTCTCTGCAGAACCCTGTCTTCAATGTTGATGACTATCTTCAGGTGCACTTGGAACTGTTCCCACCCACTGGAAAAAAATTTAATAGGTCAGAGATTTCAAGGCTTGGGTTTTCTATGAGTAATCAAACTTTCAAGCCTCCAGCGGAGTTTGGACCCTACTATTTTATTGCATCTCCTTATCTTTTCCCAGACGGGGGAACTTCTTTTAGCAAGAGGATCATTGCTGGGATCGCCTGCGGTTGTGCTATTCTGGTCCTGGGGCTTGTTGGGCTTGGGATATATGCTGTTCGTCAAAAGAAACGCGCTGAAAGAGCCATTGGACTAAGTAAACCATTTGCATCTTGGGCTCCAAGTGGCAAAGACAGTGGAGGTGCACCTCAATTAAAGGGAGCTAGATGGTTCGCTTACGATGAACTGAAAAAATGCACTCATAACTTCTCCGATAATAATGAGATTGGATCTGGGGGCTATGGCAAGGTCTACAGAGGAATGCTACCTAGTGGGCAAGTAATCGCAATTAAAAGAGCACAGCAAGGTTCAATGCAAGGTGGGCTTGAGTTCAAAACTGAAATTGAGTTGCTTTCACGGGTTCACCACAAGAACCTTGTTGGCCTTGTGGGATTTTGTTTTGAACAAGGAGAACAGATGCTGGTTTATGAGTTTATGCCTAATGGAACCCTTAGGGAAAGCTTGTCAGGTATAAGCTCACTTTCATTTCATATGCATGATAATGGCAATTTGACATTGACATTGGAAATTTGA

Network for GWHGAAZE005271

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	560	645	3.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VIII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	113.126
	SRR3591706	second leaf	7.307
	SRR3591707	mature leaf	0.861
	SRR3591708	Shoot apex	7.520
	SRR3591709	Stem	133.039
	SRR3591710	White floral bud	5.724
	SRR3591711	White flower	2.994
	SRR3591712	Green floral bud	4.724
	SRR3591713	Yellow flower	1.250
SRP173429	SRR8316895	Juvenile bud stage	7.720
	SRR8316896	Juvenile bud stage	12.264
	SRR8316897	Juvenile bud stage	4.509
	SRR8316894	Third green stage	4.315
	SRR8316900	Third green stage	6.387
	SRR8316901	Third green stage	9.488
	SRR8316898	Complete white stage	1.881
	SRR8316899	Complete white stage	4.110
	SRR8316903	Complete white stage	4.680
	SRR8316902	Silver flowering stage	1.769
	SRR8316904	Silver flowering stage	2.318
	SRR8316905	Silver flowering stage	1.138
	SRR8316906	Gold flowering stage	2.747
	SRR8316907	Gold flowering stage	3.675
	SRR8316908	Gold flowering stage	3.196
SRP132670	SRR6706286	Control	4.865
	SRR6706287	Light intensity 50%	5.070
	SRR6706288	Light intensity 20%	5.087
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.840
	CNS0095593	Slightly white alabastrum(diploid) 2	3.842
	CNS0095594	Slightly white alabastrum(diploid) 3	5.950
	CNS0095595	Whole white alabastrum(diploid) 2	3.523
	CNS0095596	Whole white alabastrum(diploid) 3	3.597
	CNS0095597	Whole white alabastrum(diploid) 4	4.345
	CNS0095598	Silvery flower (diploied) 1	1.993
	CNS0095599	Silvery flower (diploied) 2	1.103
	CNS0095600	Silvery flower (diploied) 3	2.797
	CNS0095601	Golden flower (diploid) 1	0.839
	CNS0095602	Golden flower (diploid) 2	1.983
	CNS0095603	Golden flower (diploid) 3	2.102
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.139
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.079
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.452
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.109
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.011
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.469
	CNS0095610	Silvery flower (tetraploid) 1	3.968
	CNS0095611	Silvery flower (tetraploid) 2	2.785
	CNS0095612	Silvery flower (tetraploid) 3	3.963
	CNS0095613	Golden flower (tetraploid) 1	0.926
	CNS0095614	Golden flower (tetraploid) 2	1.415
	CNS0095615	Golden flower (tetraploid) 3	1.139
CRA001975	CRR073297	Stem 1	9.705
	CRR073298	Stem 2	10.057
	CRR073299	Stem 3	14.953
	CRR073300	Leaf 1	7.347
	CRR073301	Leaf 2	6.446
	CRR073302	Leaf 3	7.701
	CRR073303	Juvenile bud 1	2.318
	CRR073304	Juvenile bud 2	2.432
	CRR073305	Juvenile bud 3	4.836
	CRR073306	Third green 1	2.331
	CRR073307	Third green 2	2.937
	CRR073308	Third green 3	3.980
	CRR073309	Second white 1	1.071
	CRR073310	Second white 2	1.349
	CRR073311	Second white 3	2.202
	CRR073312	Silver flowering 1	1.708
	CRR073313	Silver flowering 2	1.236
	CRR073314	Silver flowering 3	0.796
	CRR073315	Gold flowering 1	1.050
	CRR073316	Gold flowering 2	2.068
	CRR073317	Gold flowering 3	2.116
	CRR073318	Tawny withering 1	53.213
	CRR073319	Tawny withering 2	24.565
	CRR073320	Tawny withering 3	78.022