Gene detail

Detail information of GWHGAAZE003369

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275275.1	0	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Vitis vinifera]
COG	YP_004775215.1	9E-60	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LRT1\|Y3804_ARATH	9E-155	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 (Precursor)
trEMBL	tr\|F6HC72\|F6HC72_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49784.1}
TAIR10	AT3G56370.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96714344	96718227	-
GWHAAZE00000001	mRNA	96714344	96718227	-
GWHAAZE00000001	exon	96717931	96718227	-
GWHAAZE00000001	exon	96716863	96717293	-
GWHAAZE00000001	exon	96715942	96716791	-
GWHAAZE00000001	exon	96714995	96715780	-
GWHAAZE00000001	exon	96714344	96714512	-
GWHAAZE00000001	five_prime_UTR	96717993	96718227	-
GWHAAZE00000001	CDS	96717931	96717992	-
GWHAAZE00000001	CDS	96716863	96717293	-
GWHAAZE00000001	CDS	96715942	96716791	-
GWHAAZE00000001	CDS	96714995	96715780	-
GWHAAZE00000001	CDS	96714344	96714512	-

Transcript Sequence
>GWHTAAZE003375 AATAGGTCTTAATCTTATTATTATTACTCACGGCGGCCGGAAGCTTCACCTCCGCTTTTTCCGGCGGCTTATCCGGTAATTCCGTTTCTGAATATCTTTAACTTTCCTTACCCGGAAACTCTGTGGATTCTCTTTTCTTTAGTTTTCCGGCTGCTTTCCCGGCGATACTTGGAGTTCTCAGCTCACATTGCCCCTCAGATCGAACTCTTTGCTGCATCAGCTTCAAAGAACACTAATGAGCTCCACAGTTGAATTTTACGTCTCAGAGAGATTTCTAGGTTTTACTTTATTTTTTTGGCTGACATTCGGAGATCCTGATGGGAAATTGGTTTCTTGGAATGAAGATGACAATAGTCCCTGTAACTGGGTGGGGGTAAAATGCAACCCTAGGTCCAATAGGGTTTCCGATCTCGTCCTTGATGGCTTCGGCCTTTCTGGACGGATAGGCAGAGGTCTGCTCCAACTGCAATTTCTCCGCAAGTTATCGCTCGCGAAGAACAATCTTACTGGAAGCATAAACCTCAATCTTTCCCAACTTGTAAACTTAAGGTCCATTGACTTGAGTGAGAACAGTCTTTCTGGACCGATTTCAGCCAATTTCTTTCAGCAATGTTTGTATTTGAGATCAATTTCTTTAGCCCATAACAAGTTTTCAGGCCATATTTCAGACAATTTGGGCTCATGTTCGTCGCTTGCTGCAGTTAACTTTTCCTCTAACCAGTTTTCAGGTGAGATTCCAAAGGACATTCAAGGTCTGTATAACTTGAGAGGGATAAATTTGCAGAAGAATCAGTTTACGGGACAGCTTCCGGGTGAGATTGGTAGTTGTATGCTGTTGAGGTCAATCGATTTCAGTGAGAATTCTTTCTCTGGAAGTATTCCAAACACAATGCAGAAGCTTACTTTGTGTAATGATTTAAATTTACAGAAAAATTCATTTACTGGTATTGTCCCGGAATGGATTGGAGAAATGACAAGCCTTGAGAGAATGGATCTTTCTTGTAATAACTTTTCTGGCCACATTCCAATTTCAGTTGGGAAGCTTCAGTCGCTTAAGGTACTGAATATTTCCATGAATGCCTTCACTGGGAGCTTGCCCGAGTCTATGGTCAATTGCGAAAACCTTTTGGCCTTAGATGTTAGTCAGAATTCTTTGACCGGCTATCTTCCTTCTTGGGTATTTAAAATGGGATTACAAAAGGTTCTGTTTTCAAAGAATAAACTAAGTGGGAGTATGGACAATGCCATTACTTCGTCAATCGCAAACTCATGCCGAAAGCTTCAAGTTTTGGATTTATCCCATAATGCATTATCTGGTGAAATTTCATCTGGTGTTGGGGATTTTAGCAGTTTGCAAGTCTTGAATTTGTCAAAGAATTCACTAATGGGTGCAATTCCAGCGAGTATTAGAGAACTCAAGTCCTTGGATATACTTGATTTCAGTGATAATCAGTTGAACGGAAGCATTCCTTTGGAAATTGGAGGAGCTATATCTTTGACAGAACTGAGACTGGAGAAGAACTCCTTGGCGGGTGAAATTCCAACTTCAGTTCAGAATTGTTCTTCACTAACATCATTGATTCTGTTTCAGAACAACTTAACTGGGCATATACCTGCAGCCATGGCAAAACTAACATACCTTCAAACTGTAGATTTATCCTTTAACAAGCTCACTGGAACCCTACCAAAGCAGTTGGCAAATCTTGACCGTATCATCTCCTTCAACATTTCACACAACCAACTCCAAGGGGAGCTTCCCTCGGGTGGTTTTTTCAACACCATATCGCCATCATCCCTCTCTGGCAATCCCTCTCTTTGTGGTGCTGCAGTCAATAAGAGCTGCCCTACTGTCCTTCCCAAGCCAATAGTTCTTAACCCCAACTCTTCTGATTCGACCCCGGGCTCAATTCCCCAAGCCTTTGGCCATAAGAAGATAATTCTTAGCATTTCGGCTCTAATTGCTATAGGTGCAGCTGCTGTGATTATCATTGGCATAATTGCCGTCACTGTCCTCAATCTCCGTGTCCGTTCTTCCTCCGCATCTCACTCTGGCACCGCTGGTTTTACATTATCCGGTGGTGATGAATTCAGCAATTCCCCCGGTACAGACGCCAACTCCGGCAAGCTGGTCATGTTTTCTGGTGACCATGATTTCAGCACGGGAGCACATGCACTGCTCAACAAAGATTGTGAGCTCGGACGAGGCGGATTTGGAGCAGTGTACCGCACTGTTCTTAGAGATGGGCGTCCCGTTGCCATCAAGAAGCTCACCGTCTCCAGTCTTGTCAAGTCCCAAGAAGATTTTGAAAGGGAAATTAAGAAATTGGGAAAAATCCGCCACCCTAATCTAGTTGCTCTTGAAGGGGTGGAGGACTCTGTTGATGTGAGGCTGCATGGTAAGTTTCCTGCTGAGGAGGCAATCCCCGTAATCAAGTTAGGTTTAATTTGCACATCACAGGTGCCTTCAAACCGGCCAGACATGGCGGAGGTGATTAACATATTGGAGCTGATCAGGTGCCCTTCGGAAGGGCAG

Network for GWHGAAZE003369

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	24	50	1.90E-06
PF13855.7	LRR_8	248	307	1.30E-07
PF13855.7	LRR_8	347	407	4.00E-07
PF13516.7	LRR_6	466	481	1.9
PF00069.26	Pkinase	651	712	1.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004713	molecular_function	protein tyrosine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.093
	SRR3591706	second leaf	12.687
	SRR3591707	mature leaf	0.440
	SRR3591708	Shoot apex	39.064
	SRR3591709	Stem	11.714
	SRR3591710	White floral bud	2.542
	SRR3591711	White flower	1.009
	SRR3591712	Green floral bud	6.025
	SRR3591713	Yellow flower	0.133
SRP173429	SRR8316895	Juvenile bud stage	10.811
	SRR8316896	Juvenile bud stage	8.343
	SRR8316897	Juvenile bud stage	4.025
	SRR8316894	Third green stage	3.493
	SRR8316900	Third green stage	8.287
	SRR8316901	Third green stage	8.786
	SRR8316898	Complete white stage	0.455
	SRR8316899	Complete white stage	5.827
	SRR8316903	Complete white stage	1.980
	SRR8316902	Silver flowering stage	0.146
	SRR8316904	Silver flowering stage	0.323
	SRR8316905	Silver flowering stage	0.139
	SRR8316906	Gold flowering stage	0.056
	SRR8316907	Gold flowering stage	0.088
	SRR8316908	Gold flowering stage	0.136
SRP132670	SRR6706286	Control	4.972
	SRR6706287	Light intensity 50%	4.550
	SRR6706288	Light intensity 20%	5.190
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.609
	CNS0095593	Slightly white alabastrum(diploid) 2	5.549
	CNS0095594	Slightly white alabastrum(diploid) 3	3.653
	CNS0095595	Whole white alabastrum(diploid) 2	4.607
	CNS0095596	Whole white alabastrum(diploid) 3	2.304
	CNS0095597	Whole white alabastrum(diploid) 4	2.316
	CNS0095598	Silvery flower (diploied) 1	5.537
	CNS0095599	Silvery flower (diploied) 2	5.329
	CNS0095600	Silvery flower (diploied) 3	2.482
	CNS0095601	Golden flower (diploid) 1	4.453
	CNS0095602	Golden flower (diploid) 2	3.660
	CNS0095603	Golden flower (diploid) 3	3.311
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.318
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.762
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.558
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.745
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.798
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.739
	CNS0095610	Silvery flower (tetraploid) 1	0.295
	CNS0095611	Silvery flower (tetraploid) 2	1.278
	CNS0095612	Silvery flower (tetraploid) 3	0.740
	CNS0095613	Golden flower (tetraploid) 1	0.043
	CNS0095614	Golden flower (tetraploid) 2	0.217
	CNS0095615	Golden flower (tetraploid) 3	0.143
CRA001975	CRR073297	Stem 1	17.838
	CRR073298	Stem 2	15.743
	CRR073299	Stem 3	15.462
	CRR073300	Leaf 1	14.453
	CRR073301	Leaf 2	12.902
	CRR073302	Leaf 3	8.270
	CRR073303	Juvenile bud 1	5.143
	CRR073304	Juvenile bud 2	3.760
	CRR073305	Juvenile bud 3	8.405
	CRR073306	Third green 1	1.318
	CRR073307	Third green 2	1.159
	CRR073308	Third green 3	1.006
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.009
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.094
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.436
	CRR073316	Gold flowering 2	3.854
	CRR073317	Gold flowering 3	3.453
	CRR073318	Tawny withering 1	17.163
	CRR073319	Tawny withering 2	16.627
	CRR073320	Tawny withering 3	20.208