Gene detail

Detail information of GWHGAAZE002782

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG18092.1	0	hypothetical protein F383_22985 [Gossypium arboreum]
COG	YP_001958461.1	7E-14	hypothetical protein Aasi_1443
Swissprot	tr\|Q9LFV3\|Y5157_ARATH	1E-70	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730
trEMBL	tr\|E0CT36\|E0CT36_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20485.3}
TAIR10	AT5G54590.2	7E-132	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	86171227	86174992	+
GWHAAZE00000001	mRNA	86171227	86174992	+
GWHAAZE00000001	exon	86171227	86171543	+
GWHAAZE00000001	exon	86172591	86172744	+
GWHAAZE00000001	exon	86173095	86173221	+
GWHAAZE00000001	exon	86173917	86174002	+
GWHAAZE00000001	exon	86174148	86174219	+
GWHAAZE00000001	exon	86174529	86174552	+
GWHAAZE00000001	exon	86174654	86174992	+
GWHAAZE00000001	CDS	86171227	86171543	+
GWHAAZE00000001	CDS	86172591	86172744	+
GWHAAZE00000001	CDS	86173095	86173221	+
GWHAAZE00000001	CDS	86173917	86174002	+
GWHAAZE00000001	CDS	86174148	86174219	+
GWHAAZE00000001	CDS	86174529	86174552	+
GWHAAZE00000001	CDS	86174654	86174992	+

Transcript Sequence
>GWHTAAZE002786 GAGATGAAAGGCGAGTCAACTGGACTGATTGTTGGGATTTCGATAGGGGTGGTAATTGGAGTTCTTTTGGCCATATTTGCATTGTTTTGCTTTAGGTTCCACAGGAAACGCTCACAGATAGGGAATAGCAGTTCGAGGAGAGCAGCAACCATTCCCATTCGTGCAAATGGTGCTGATTCTTGTACAATATTGTCGGACTCGTCTCTAGGAACGGAGTCACCGAAATCGACAATGCAAAATGGCATGGCCGTGTGGCTTGGAGGACTTAGAAGGGGTCATGTTGTTTCTGCATCTGGAATAATGGAGTACTCTTACAAGGATCTACAAAAAGCGACCTACAATTTTACCTCTTTGATTGGCCAAGGAGCGTTTGGTCCTGTTTACAAAGCTCAGATGTCAACTGGCGCGACCGTTGCTGTTAAAGTCCTTGCAACTGATTCTAAACAAGGGGAAAAAGAATTTCAAACGGAGGTTATGTTATTGGGAAGGTTACATCACAGGAACCTCGTGAATTTAGTTGGATACTGTGCAGAAAAAGGCCAGCACATGCTTATATATGTTTACATGAACAAAGGCAGTTTGGCTTCTCATCTGTATGGCGAGAAGCATGAACCATTAAACTGGGATTTGAGGCTTCAAATAGCTCTAGATGTAGCAAGAGGTTTGGAGTATCTTCATGATGGGGCTGTTCCTCCTGTGATACACCGGGACATCAAATCTTCCAATATTCTGTTGGACCAGTCCATGGGAGCCAGGGGCCTCATGGAGTTGGTTGAACTTGCCGCGATGAATACAGAGGGGAAAGTTGGGTGGGAGGAAATAGTGGATTCCCGTCTAGACGGTGAATTTGATGTTCAAGAGCTTAACGACGTGGCAGCTCTCGCATACAAATGTATAAACCGTGTCCCAAGAAAACGGCCTTCAATGAGGGACATTGTTCAAGTGCTATCACGGATGTTGAAAATGAGACAGAATAGAAAGCACCACAAGCATTCCTTGTCTGCAACTCCAGATGAGGTTCCTGTCAATGTGGACGAACCCCAACGCCTAAGTCAGCACAATGAATTACACAGGCGCGATGAATCAATGGACAGCACAGCTGACTCATGTGAAGTTTAA

Network for GWHGAAZE002782

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	115	248	3.10E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-I-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.372
	SRR3591706	second leaf	12.662
	SRR3591707	mature leaf	7.567
	SRR3591708	Shoot apex	24.016
	SRR3591709	Stem	26.471
	SRR3591710	White floral bud	13.147
	SRR3591711	White flower	7.860
	SRR3591712	Green floral bud	26.251
	SRR3591713	Yellow flower	6.736
SRP173429	SRR8316895	Juvenile bud stage	7.882
	SRR8316896	Juvenile bud stage	10.946
	SRR8316897	Juvenile bud stage	5.083
	SRR8316894	Third green stage	5.596
	SRR8316900	Third green stage	15.881
	SRR8316901	Third green stage	15.821
	SRR8316898	Complete white stage	6.382
	SRR8316899	Complete white stage	18.516
	SRR8316903	Complete white stage	8.308
	SRR8316902	Silver flowering stage	3.636
	SRR8316904	Silver flowering stage	4.810
	SRR8316905	Silver flowering stage	3.063
	SRR8316906	Gold flowering stage	11.609
	SRR8316907	Gold flowering stage	7.448
	SRR8316908	Gold flowering stage	12.831
SRP132670	SRR6706286	Control	22.779
	SRR6706287	Light intensity 50%	29.687
	SRR6706288	Light intensity 20%	29.611
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.535
	CNS0095593	Slightly white alabastrum(diploid) 2	12.426
	CNS0095594	Slightly white alabastrum(diploid) 3	10.259
	CNS0095595	Whole white alabastrum(diploid) 2	11.097
	CNS0095596	Whole white alabastrum(diploid) 3	13.399
	CNS0095597	Whole white alabastrum(diploid) 4	9.852
	CNS0095598	Silvery flower (diploied) 1	7.127
	CNS0095599	Silvery flower (diploied) 2	3.227
	CNS0095600	Silvery flower (diploied) 3	6.928
	CNS0095601	Golden flower (diploid) 1	5.347
	CNS0095602	Golden flower (diploid) 2	5.860
	CNS0095603	Golden flower (diploid) 3	4.494
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.494
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.085
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.733
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.428
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.395
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.815
	CNS0095610	Silvery flower (tetraploid) 1	6.905
	CNS0095611	Silvery flower (tetraploid) 2	7.307
	CNS0095612	Silvery flower (tetraploid) 3	8.995
	CNS0095613	Golden flower (tetraploid) 1	10.381
	CNS0095614	Golden flower (tetraploid) 2	8.543
	CNS0095615	Golden flower (tetraploid) 3	9.941
CRA001975	CRR073297	Stem 1	23.223
	CRR073298	Stem 2	24.242
	CRR073299	Stem 3	20.800
	CRR073300	Leaf 1	33.110
	CRR073301	Leaf 2	33.243
	CRR073302	Leaf 3	33.185
	CRR073303	Juvenile bud 1	30.774
	CRR073304	Juvenile bud 2	28.962
	CRR073305	Juvenile bud 3	29.695
	CRR073306	Third green 1	5.800
	CRR073307	Third green 2	7.609
	CRR073308	Third green 3	9.684
	CRR073309	Second white 1	4.865
	CRR073310	Second white 2	4.351
	CRR073311	Second white 3	4.745
	CRR073312	Silver flowering 1	6.948
	CRR073313	Silver flowering 2	11.883
	CRR073314	Silver flowering 3	7.785
	CRR073315	Gold flowering 1	4.491
	CRR073316	Gold flowering 2	6.691
	CRR073317	Gold flowering 3	7.541
	CRR073318	Tawny withering 1	42.629
	CRR073319	Tawny withering 2	32.231
	CRR073320	Tawny withering 3	44.355