Detail information of GWHGAAZE033914


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002512567.10ATP-citrate synthase, putative [Ricinus communis]
COGYP_004281831.18E-137ATP-grasp domain-containing protein
Swissprottr|Q2QNG7|ACLA3_ORYSJ0ATP-citrate synthase alpha chain protein 3
trEMBLtr|B9RFP8|B9RFP8_RICCO0ATP-citrate synthase, putative {ECO:0000313|EMBL:EEF50019.1}
TAIR10AT1G09430.10ATP-citrate lyase A-3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000145gene809494815986-
GWHAAZE00000145mRNA809494815986-
GWHAAZE00000145exon815888815986-
GWHAAZE00000145exon814038814214-
GWHAAZE00000145exon813789813950-
GWHAAZE00000145exon813329813409-
GWHAAZE00000145exon812998813049-
GWHAAZE00000145exon812514812628-
GWHAAZE00000145exon812333812414-
GWHAAZE00000145exon811630811725-
GWHAAZE00000145exon811389811490-
GWHAAZE00000145exon810899811015-
GWHAAZE00000145exon810695810811-
GWHAAZE00000145exon809494809565-
GWHAAZE00000145CDS815888815986-
GWHAAZE00000145CDS814038814214-
GWHAAZE00000145CDS813789813950-
GWHAAZE00000145CDS813329813409-
GWHAAZE00000145CDS812998813049-
GWHAAZE00000145CDS812514812628-
GWHAAZE00000145CDS812333812414-
GWHAAZE00000145CDS811630811725-
GWHAAZE00000145CDS811389811490-
GWHAAZE00000145CDS810899811015-
GWHAAZE00000145CDS810695810811-
GWHAAZE00000145CDS809494809565-
Transcript Sequence

Network for GWHGAAZE033914

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08442.11ATP-grasp_262031.30E-15
PF16114.6Citrate_bind2414179.50E-83
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01648ACLY Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Citrate cyclemap00020
Carbon fixation pathways in prokaryotesmap00720

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf109.277
SRR3591706second leaf44.016
SRR3591707mature leaf5.517
SRR3591708Shoot apex44.219
SRR3591709Stem156.773
SRR3591710White floral bud391.114
SRR3591711White flower167.612
SRR3591712Green floral bud79.268
SRR3591713Yellow flower142.698
SRP173429 SRR8316895Juvenile bud stage 56.841
SRR8316896Juvenile bud stage 70.216
SRR8316897Juvenile bud stage 26.281
SRR8316894Third green stage 26.519
SRR8316900Third green stage 92.994
SRR8316901Third green stage 95.057
SRR8316898Complete white stage 253.150
SRR8316899Complete white stage 119.403
SRR8316903Complete white stage 395.767
SRR8316902Silver flowering stage142.668
SRR8316904Silver flowering stage211.314
SRR8316905Silver flowering stage106.742
SRR8316906Gold flowering stage 218.067
SRR8316907Gold flowering stage 247.348
SRR8316908Gold flowering stage 282.790
SRP132670SRR6706286Control132.348
SRR6706287Light intensity 50%149.165
SRR6706288Light intensity 20%130.354
CNP0000432CNS0095592Slightly white alabastrum(diploid) 178.332
CNS0095593Slightly white alabastrum(diploid) 285.947
CNS0095594Slightly white alabastrum(diploid) 378.219
CNS0095595Whole white alabastrum(diploid) 271.571
CNS0095596Whole white alabastrum(diploid) 377.071
CNS0095597Whole white alabastrum(diploid) 466.598
CNS0095598Silvery flower (diploied) 175.745
CNS0095599Silvery flower (diploied) 2100.944
CNS0095600Silvery flower (diploied) 3200.219
CNS0095601Golden flower (diploid) 156.270
CNS0095602Golden flower (diploid) 2111.745
CNS0095603Golden flower (diploid) 3106.946
CNS0095604Slightly white alabastrum(tetraploid) 175.244
CNS0095605Slightly white alabastrum(tetraploid) 262.230
CNS0095606Slightly white alabastrum(tetraploid) 3122.335
CNS0095607Whole white alabastrum(tetraploid) 156.351
CNS0095608Whole white alabastrum(tetraploid) 270.233
CNS0095609Whole white alabastrum(tetraploid) 3102.543
CNS0095610Silvery flower (tetraploid) 1264.360
CNS0095611Silvery flower (tetraploid) 2214.978
CNS0095612Silvery flower (tetraploid) 3397.965
CNS0095613Golden flower (tetraploid) 1222.397
CNS0095614Golden flower (tetraploid) 2198.803
CNS0095615Golden flower (tetraploid) 3210.909
CRA001975CRR073297Stem 1108.432
CRR073298Stem 275.578
CRR073299Stem 369.364
CRR073300Leaf 1113.794
CRR073301Leaf 2107.812
CRR073302Leaf 3109.757
CRR073303Juvenile bud 1133.389
CRR073304Juvenile bud 2169.305
CRR073305Juvenile bud 3133.708
CRR073306Third green 1583.729
CRR073307Third green 2528.494
CRR073308Third green 3522.629
CRR073309Second white 1212.976
CRR073310Second white 2187.385
CRR073311Second white 3158.831
CRR073312Silver flowering 1156.838
CRR073313Silver flowering 2139.738
CRR073314Silver flowering 3152.816
CRR073315Gold flowering 19.916
CRR073316Gold flowering 211.702
CRR073317Gold flowering 39.800
CRR073318Tawny withering 1114.381
CRR073319Tawny withering 263.629
CRR073320Tawny withering 3159.452