Gene detail

Detail information of GWHGAAZE033860

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008387843.1	3.98593E-70	PREDICTED: uncharacterized protein LOC103450281 isoform X6 [Malus domestica]
trEMBL	tr\|A0A061GS67\|A0A061GS67_THECC	5E-58	GPI mannosyltransferase 2 isoform 3 {ECO:0000313\|EMBL:EOY32361.1}
TAIR10	AT1G11880.1	3E-35	transferases, transferring hexosyl groups

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000143	gene	152031	160433	+
GWHAAZE00000143	mRNA	152031	160433	+
GWHAAZE00000143	exon	152031	152409	+
GWHAAZE00000143	exon	158641	158910	+
GWHAAZE00000143	exon	160126	160433	+
GWHAAZE00000143	CDS	152031	152409	+
GWHAAZE00000143	CDS	158641	158910	+
GWHAAZE00000143	CDS	160126	160433	+

Transcript Sequence
>GWHTAAZE033900 ATGACGAGGACCATTCAAAATCGAATTGAAAAAAATCACACCACCACCAATCACACTCGCCTCATTTTCCAATCAGCAATCGCATCAAGACTCCTTGTCATAGCACTAATCATACTCTGGAGGAATCTCCTCAGCCCCTACGACACCTCTGCATCATTAAACCCTAATAATTGCATTTCTTCTTCCTCCTCCAACAATGGCAGCAGCAGCCGTGGCATTAACATTCGCTTCCCTCGCATCGCTTCGGCTATTGAAGAGAGCATCGTGTGGGATGGCGTTTACTTCGTCCGAATCGCGGAATGCGGGGGTTACGAATACGAGCAGTCCTACGCCTTCTTGCCTCTTCTCCCTATCTCCATTTCTTTCCTCTCCATAACAGTGCGATCATTTTCCAACTATTTTTCAACTAAATCTTTTTATTTCTATGCCGGTTGGCGGGTTCTTATCGGGGAGCTTTCGCTGCTCTATTTGTGTTTTGTTCCATTTATTGCTTTTCAAGCATATGGCTACTATAATATTTGTCTTGGCGCTTATGTGGAGGAAACTAGGTCGTGGTGCAAGGCAAGAATTCCTTTGTACAATTTTATTCAGAGTCACTATTGGTATGTTGGTATCTTCTTACCGGGTCCATGTCATTTTCTGTCTTTTGCTCATGTTTATAATTTCTTCTATGTCAGGGGAGTAGGGTTTTTAAGATATTTCCAGCTAAAACAGTTGCCAAATTTCCTACTTGCTTTCCCAATATTGTCACTAGCTGTTTGTTCAATCATCAACTATGCGAAGCTACGAAGGGAGGTTTTTCTCTCACTTGGTTTCCGGGCTTCTCCTGTGGATAAGAAGTCTGCTGCTGTGTTCTTTTCTGTGTGGACAGAGTCAAGATCAAAAAGTGAATCTGTTTTAGAGAAAGAAACTACTAAAATACGTGAAGTTAAAAATTTTAAATCCAGCTGTTTCTGA

Network for GWHGAAZE033860

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04188.14	Mannosyl_trans2	24	128	7.20E-19
PF04188.14	Mannosyl_trans2	147	206	7.00E-13
PF04188.14	Mannosyl_trans2	219	283	1.50E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07542	PIGV	Metabolic pathways	map01100
K07542	PIGV	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	biological_process	GPI anchor biosynthetic process
GO:0004584	molecular_function	obsolete dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.399
	SRR3591706	second leaf	0.275
	SRR3591707	mature leaf	0.534
	SRR3591708	Shoot apex	0.521
	SRR3591709	Stem	0.362
	SRR3591710	White floral bud	0.268
	SRR3591711	White flower	0.250
	SRR3591712	Green floral bud	0.297
	SRR3591713	Yellow flower	0.363
SRP173429	SRR8316895	Juvenile bud stage	0.165
	SRR8316896	Juvenile bud stage	0.330
	SRR8316897	Juvenile bud stage	0.369
	SRR8316894	Third green stage	0.111
	SRR8316900	Third green stage	0.257
	SRR8316901	Third green stage	0.212
	SRR8316898	Complete white stage	0.027
	SRR8316899	Complete white stage	0.209
	SRR8316903	Complete white stage	0.215
	SRR8316902	Silver flowering stage	0.236
	SRR8316904	Silver flowering stage	0.117
	SRR8316905	Silver flowering stage	0.057
	SRR8316906	Gold flowering stage	0.066
	SRR8316907	Gold flowering stage	0.185
	SRR8316908	Gold flowering stage	0.120
SRP132670	SRR6706286	Control	0.040
	SRR6706287	Light intensity 50%	0.108
	SRR6706288	Light intensity 20%	0.103
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.154
	CNS0095593	Slightly white alabastrum(diploid) 2	0.070
	CNS0095594	Slightly white alabastrum(diploid) 3	0.080
	CNS0095595	Whole white alabastrum(diploid) 2	0.209
	CNS0095596	Whole white alabastrum(diploid) 3	0.142
	CNS0095597	Whole white alabastrum(diploid) 4	0.113
	CNS0095598	Silvery flower (diploied) 1	0.216
	CNS0095599	Silvery flower (diploied) 2	0.195
	CNS0095600	Silvery flower (diploied) 3	0.009
	CNS0095601	Golden flower (diploid) 1	0.103
	CNS0095602	Golden flower (diploid) 2	0.256
	CNS0095603	Golden flower (diploid) 3	0.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.669
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.877
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.028
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.374
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.610
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.562
	CNS0095610	Silvery flower (tetraploid) 1	0.141
	CNS0095611	Silvery flower (tetraploid) 2	0.680
	CNS0095612	Silvery flower (tetraploid) 3	0.728
	CNS0095613	Golden flower (tetraploid) 1	0.423
	CNS0095614	Golden flower (tetraploid) 2	0.176
	CNS0095615	Golden flower (tetraploid) 3	0.466
CRA001975	CRR073297	Stem 1	0.110
	CRR073298	Stem 2	0.125
	CRR073299	Stem 3	0.003
	CRR073300	Leaf 1	0.161
	CRR073301	Leaf 2	0.260
	CRR073302	Leaf 3	0.152
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.034
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.006
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.036
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.052
	CRR073313	Silver flowering 2	0.059
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.169
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.120
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.164