Detail information of GWHGAAZE033801


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002870350.10hypothetical protein ARALYDRAFT_915516 [Arabidopsis lyrata subsp. lyrata]
COGYP_003396398.10adenosylhomocysteinase
Swissprottr|Q01781|SAHH_PETCR0Adenosylhomocysteinase
trEMBLtr|D7MH99|D7MH99_ARALL0Adenosylhomocysteinase {ECO:0000256|RuleBase:RU000548}
TAIR10AT4G13940.10S-adenosyl-L-homocysteine hydrolase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000139gene157092159310-
GWHAAZE00000139mRNA157092159310-
GWHAAZE00000139exon157092157838-
GWHAAZE00000139exon158600159310-
GWHAAZE00000139CDS158600159310-
GWHAAZE00000139CDS157092157838-
Transcript Sequence

Network for GWHGAAZE033801

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05221.18AdoHcyase134841.50E-144
PF00670.22AdoHcyase_NAD2404039.70E-84
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01251E3.3.1.1, ahcY Metabolic pathways map01100
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0004013molecular_functionadenosylhomocysteinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf613.572
SRR3591706second leaf266.619
SRR3591707mature leaf76.288
SRR3591708Shoot apex259.606
SRR3591709Stem1027.496
SRR3591710White floral bud208.117
SRR3591711White flower175.817
SRR3591712Green floral bud433.833
SRR3591713Yellow flower154.796
SRP173429 SRR8316895Juvenile bud stage 393.799
SRR8316896Juvenile bud stage 421.042
SRR8316897Juvenile bud stage 96.107
SRR8316894Third green stage 192.193
SRR8316900Third green stage 628.448
SRR8316901Third green stage 601.857
SRR8316898Complete white stage 193.138
SRR8316899Complete white stage 392.412
SRR8316903Complete white stage 184.427
SRR8316902Silver flowering stage124.753
SRR8316904Silver flowering stage157.784
SRR8316905Silver flowering stage69.653
SRR8316906Gold flowering stage 180.513
SRR8316907Gold flowering stage 182.639
SRR8316908Gold flowering stage 213.439
SRP132670SRR6706286Control539.941
SRR6706287Light intensity 50%597.437
SRR6706288Light intensity 20%635.394
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1352.337
CNS0095593Slightly white alabastrum(diploid) 2335.555
CNS0095594Slightly white alabastrum(diploid) 3330.955
CNS0095595Whole white alabastrum(diploid) 2270.482
CNS0095596Whole white alabastrum(diploid) 3351.035
CNS0095597Whole white alabastrum(diploid) 4249.362
CNS0095598Silvery flower (diploied) 1203.807
CNS0095599Silvery flower (diploied) 2198.987
CNS0095600Silvery flower (diploied) 3158.105
CNS0095601Golden flower (diploid) 1109.358
CNS0095602Golden flower (diploid) 2164.103
CNS0095603Golden flower (diploid) 3149.932
CNS0095604Slightly white alabastrum(tetraploid) 1550.941
CNS0095605Slightly white alabastrum(tetraploid) 2450.402
CNS0095606Slightly white alabastrum(tetraploid) 3747.683
CNS0095607Whole white alabastrum(tetraploid) 1396.442
CNS0095608Whole white alabastrum(tetraploid) 2324.298
CNS0095609Whole white alabastrum(tetraploid) 3689.286
CNS0095610Silvery flower (tetraploid) 1158.803
CNS0095611Silvery flower (tetraploid) 2112.775
CNS0095612Silvery flower (tetraploid) 368.605
CNS0095613Golden flower (tetraploid) 1126.216
CNS0095614Golden flower (tetraploid) 2167.839
CNS0095615Golden flower (tetraploid) 354.108
CRA001975CRR073297Stem 11044.118
CRR073298Stem 2870.322
CRR073299Stem 31390.383
CRR073300Leaf 1948.983
CRR073301Leaf 21036.811
CRR073302Leaf 31585.426
CRR073303Juvenile bud 11173.298
CRR073304Juvenile bud 22095.121
CRR073305Juvenile bud 31033.435
CRR073306Third green 11055.717
CRR073307Third green 2724.181
CRR073308Third green 3760.831
CRR073309Second white 1262.987
CRR073310Second white 2134.394
CRR073311Second white 3107.757
CRR073312Silver flowering 1273.850
CRR073313Silver flowering 2373.200
CRR073314Silver flowering 3298.551
CRR073315Gold flowering 1123.538
CRR073316Gold flowering 2139.464
CRR073317Gold flowering 3153.898
CRR073318Tawny withering 1880.507
CRR073319Tawny withering 2567.117
CRR073320Tawny withering 31235.555