Gene detail

Detail information of GWHGAAZE033589

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009376335.1	PREDICTED: glucan endo-1,3-beta-glucosidase 6 [Pyrus x bretschneideri]
Swissprot	tr\|Q93Z08\|E136_ARATH	Glucan endo-1,3-beta-glucosidase 6 (Precursor)
trEMBL	tr\|A0A067GDD2\|A0A067GDD2_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO73371.1}
TAIR10	AT5G58090.1	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000108	gene	2996272	3002373	+
GWHAAZE00000108	mRNA	2996272	3002373	+
GWHAAZE00000108	exon	2996272	2996618	+
GWHAAZE00000108	exon	3001122	3001928	+
GWHAAZE00000108	exon	3002030	3002190	+
GWHAAZE00000108	exon	3002270	3002373	+
GWHAAZE00000108	CDS	2996272	2996618	+
GWHAAZE00000108	CDS	3001122	3001928	+
GWHAAZE00000108	CDS	3002030	3002190	+
GWHAAZE00000108	CDS	3002270	3002373	+

Transcript Sequence
>GWHTAAZE033628 ATGGGGTTTGTTTCAGTTAGAGTACTAATAGTGGTTTTGACACTAGTTGTTTTAGCATCATGGGGTGAGTTAGTGGGTGGGCTTGGTGCTAATTGGGGAACACAGGCATCCCACCCGCTGCCGCCAGAGACGGTGGTTAGGCTATTGAAAGAAAATGGGATTCAAAAAGTGAAGCTATTTGATGCGGATTACGGGGCTTTGAGAGCTCTAAGTAAGTCTGAGATTGAGGTTATGGTTGGGATTCCAAATGATATGCTCGCAACCTTGGCTAGCAGTATGAAGGCTGCCGAGAAATGGGTTTCTAAAAATATATCTGCTCATATGTCTAACAATAATGTCAACATCAGGTATGTTGCAGTTGGGAATGAACCATTTTTGTCAACTTATAATGGAACCTTTCTGAGAACAACGTTCCCTGCTCTCCGAAACATCCAATCCGCCCTCATAAAAGCTGGGCTTAGCAACCGAGTAAAGGTCACTTGCCCACAAAATGCTGACGTATATGAGAGCTCTAGTACCCTTCCTTCTGGTGGCGATTTCCGAGCTGACATCCACGATTACATGATACAAATCGTCAAGTTCCTTAACGACAACGGTGCACCCTTCACCGTCAACATCTACCCATTTATTAGCCTCTACATCGACCCAAATTTCCCAGCTGACTATGCCTTCTTTGATGGTAACTCGTCCCCTATAAACGATGGTGGCACAAACTATTACAACATGTTCGACGCAAACCATGATACACTTGTGTGGGCCCTTCAAAAGAACGGGTTCGGTAACATGCCCATAATAGTAGGTGAAATTGGTTGGCCCACTGATGGGGACCGTAACGCTAATCTCGAGTACGCTCAACGGTTCAACCAAGGGTTTATGTCCCATATATCTGGCGGAAAAGGGACCCCGATGAGACCCGGGCCTGTTGAGGTTTATCTCTTTAGCTTGATTGATGAGGATGAGAAGAGTGTTGACCCCGGCAATTTCGAACGCCATTGGGGAATATTTACCTATGATGGGTTACCTAAGTATGCTCTTAATCTTGGTACGACAAATGCTGGAACTTTGGTAAGGGCAAGAAATGTGCAATATTTGGAGCGGAAATGGTGCATTATGAAGCCGGGAGCAAAGCTTGATGACGCCAAGTGGCACCCAGCTTACTACCAGAAGAATAATCAGCTTGATAAAGCGTGCAAGTTCCCCGATGGACTATCAGTGGTGACGAAAGTAGATCCGACGGTTGGAACTTGCAGGTTTGGGATCATGATCCAGCCATACTACGGCGCTGCTGAGCGGAGGATCAAGAAGGGATGGGGAGGAGTAGTTCTTGATCATATGATTATTTTGGTGAATATTGGTAGGCAAAGATCTGTCTCTAGTAGAGTTTGCAGGACTATGTGGGGAATATCTGACAATCCATGA

Network for GWHGAAZE033589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.19	Glyco_hydro_17	28	346	1.80E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19893	GN5_6	Metabolic pathways	map01100
K19893	GN5_6	Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.182
	SRR3591706	second leaf	12.025
	SRR3591707	mature leaf	4.179
	SRR3591708	Shoot apex	35.640
	SRR3591709	Stem	16.112
	SRR3591710	White floral bud	6.559
	SRR3591711	White flower	2.608
	SRR3591712	Green floral bud	25.148
	SRR3591713	Yellow flower	1.496
SRP173429	SRR8316895	Juvenile bud stage	12.523
	SRR8316896	Juvenile bud stage	14.801
	SRR8316897	Juvenile bud stage	5.888
	SRR8316894	Third green stage	7.107
	SRR8316900	Third green stage	20.297
	SRR8316901	Third green stage	19.962
	SRR8316898	Complete white stage	3.251
	SRR8316899	Complete white stage	27.294
	SRR8316903	Complete white stage	7.414
	SRR8316902	Silver flowering stage	1.948
	SRR8316904	Silver flowering stage	2.106
	SRR8316905	Silver flowering stage	1.013
	SRR8316906	Gold flowering stage	2.760
	SRR8316907	Gold flowering stage	1.833
	SRR8316908	Gold flowering stage	2.143
SRP132670	SRR6706286	Control	22.186
	SRR6706287	Light intensity 50%	19.719
	SRR6706288	Light intensity 20%	22.218
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.604
	CNS0095593	Slightly white alabastrum(diploid) 2	25.465
	CNS0095594	Slightly white alabastrum(diploid) 3	18.760
	CNS0095595	Whole white alabastrum(diploid) 2	18.297
	CNS0095596	Whole white alabastrum(diploid) 3	19.158
	CNS0095597	Whole white alabastrum(diploid) 4	13.024
	CNS0095598	Silvery flower (diploied) 1	18.015
	CNS0095599	Silvery flower (diploied) 2	14.349
	CNS0095600	Silvery flower (diploied) 3	8.526
	CNS0095601	Golden flower (diploid) 1	14.476
	CNS0095602	Golden flower (diploid) 2	10.636
	CNS0095603	Golden flower (diploid) 3	11.234
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.150
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.578
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.939
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.688
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.351
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.278
	CNS0095610	Silvery flower (tetraploid) 1	6.970
	CNS0095611	Silvery flower (tetraploid) 2	8.621
	CNS0095612	Silvery flower (tetraploid) 3	9.070
	CNS0095613	Golden flower (tetraploid) 1	3.214
	CNS0095614	Golden flower (tetraploid) 2	6.422
	CNS0095615	Golden flower (tetraploid) 3	4.308
CRA001975	CRR073297	Stem 1	34.446
	CRR073298	Stem 2	35.800
	CRR073299	Stem 3	31.870
	CRR073300	Leaf 1	45.660
	CRR073301	Leaf 2	46.027
	CRR073302	Leaf 3	29.279
	CRR073303	Juvenile bud 1	29.438
	CRR073304	Juvenile bud 2	17.213
	CRR073305	Juvenile bud 3	41.745
	CRR073306	Third green 1	3.455
	CRR073307	Third green 2	5.632
	CRR073308	Third green 3	5.158
	CRR073309	Second white 1	1.822
	CRR073310	Second white 2	2.238
	CRR073311	Second white 3	1.264
	CRR073312	Silver flowering 1	1.441
	CRR073313	Silver flowering 2	0.848
	CRR073314	Silver flowering 3	3.208
	CRR073315	Gold flowering 1	7.792
	CRR073316	Gold flowering 2	7.318
	CRR073317	Gold flowering 3	10.926
	CRR073318	Tawny withering 1	20.411
	CRR073319	Tawny withering 2	15.573
	CRR073320	Tawny withering 3	20.485