Detail information of GWHGAAZE033553


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002279361.10PREDICTED: UPF0202 protein At1g10490 [Vitis vinifera]
COGNP_578233.13E-67DNA helicase
Swissprottr|Q9XIK4|U202A_ARATH0UPF0202 protein At1g10490
trEMBLtr|D7SW77|D7SW77_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI21526.3}
TAIR10AT3G57940.20Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000108gene14187731436412-
GWHAAZE00000108mRNA14187731436412-
GWHAAZE00000108exon14362421436412-
GWHAAZE00000108exon14360381436160-
GWHAAZE00000108exon14349411435114-
GWHAAZE00000108exon14345471434657-
GWHAAZE00000108exon14343121434445-
GWHAAZE00000108exon14341201434213-
GWHAAZE00000108exon14335371433635-
GWHAAZE00000108exon14325721432708-
GWHAAZE00000108exon14322961432393-
GWHAAZE00000108exon14318451431968-
GWHAAZE00000108exon14316681431755-
GWHAAZE00000108exon14314771431576-
GWHAAZE00000108exon14313431431395-
GWHAAZE00000108exon14308441430865-
GWHAAZE00000108exon14298511430008-
GWHAAZE00000108exon14297161429753-
GWHAAZE00000108exon14250131425106-
GWHAAZE00000108exon14239021424010-
GWHAAZE00000108exon14237321423801-
GWHAAZE00000108exon14235031423650-
GWHAAZE00000108exon14230071423135-
GWHAAZE00000108exon14207291420854-
GWHAAZE00000108exon14191421419207-
GWHAAZE00000108exon14187731419051-
GWHAAZE00000108CDS14362421436412-
GWHAAZE00000108CDS14360381436160-
GWHAAZE00000108CDS14349411435114-
GWHAAZE00000108CDS14345471434657-
GWHAAZE00000108CDS14343121434445-
GWHAAZE00000108CDS14341201434213-
GWHAAZE00000108CDS14335371433635-
GWHAAZE00000108CDS14325721432708-
GWHAAZE00000108CDS14322961432393-
GWHAAZE00000108CDS14318451431968-
GWHAAZE00000108CDS14316681431755-
GWHAAZE00000108CDS14314771431576-
GWHAAZE00000108CDS14313431431395-
GWHAAZE00000108CDS14308441430865-
GWHAAZE00000108CDS14298511430008-
GWHAAZE00000108CDS14297161429753-
GWHAAZE00000108CDS14250131425106-
GWHAAZE00000108CDS14239021424010-
GWHAAZE00000108CDS14237321423801-
GWHAAZE00000108CDS14235031423650-
GWHAAZE00000108CDS14230071423135-
GWHAAZE00000108CDS14207291420854-
GWHAAZE00000108CDS14191421419207-
GWHAAZE00000108CDS14187731419051-
Transcript Sequence

Network for GWHGAAZE033553

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08351.12DUF1726281343.80E-24
PF05127.15Helicase_RecD2154121.30E-61
PF13718.7GNAT_acetyltr_24525947.10E-53
PF13725.7tRNA_bind_26368558.50E-58
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14521NAT10, KRE33 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0016072biological_processrRNA metabolic process
GO:0034470biological_processncRNA processing
GO:0005524molecular_functionATP binding
GO:0008080molecular_functionN-acetyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.782
SRR3591706second leaf5.693
SRR3591707mature leaf7.466
SRR3591708Shoot apex12.729
SRR3591709Stem7.029
SRR3591710White floral bud6.037
SRR3591711White flower9.478
SRR3591712Green floral bud10.448
SRR3591713Yellow flower7.254
SRP173429 SRR8316895Juvenile bud stage 11.548
SRR8316896Juvenile bud stage 15.655
SRR8316897Juvenile bud stage 6.251
SRR8316894Third green stage 5.417
SRR8316900Third green stage 12.047
SRR8316901Third green stage 10.072
SRR8316898Complete white stage 1.982
SRR8316899Complete white stage 9.087
SRR8316903Complete white stage 3.511
SRR8316902Silver flowering stage3.095
SRR8316904Silver flowering stage5.294
SRR8316905Silver flowering stage2.043
SRR8316906Gold flowering stage 7.193
SRR8316907Gold flowering stage 7.678
SRR8316908Gold flowering stage 9.940
SRP132670SRR6706286Control11.118
SRR6706287Light intensity 50%11.077
SRR6706288Light intensity 20%13.265
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.573
CNS0095593Slightly white alabastrum(diploid) 28.497
CNS0095594Slightly white alabastrum(diploid) 38.582
CNS0095595Whole white alabastrum(diploid) 25.244
CNS0095596Whole white alabastrum(diploid) 35.228
CNS0095597Whole white alabastrum(diploid) 44.282
CNS0095598Silvery flower (diploied) 18.767
CNS0095599Silvery flower (diploied) 26.349
CNS0095600Silvery flower (diploied) 37.015
CNS0095601Golden flower (diploid) 14.535
CNS0095602Golden flower (diploid) 25.679
CNS0095603Golden flower (diploid) 35.199
CNS0095604Slightly white alabastrum(tetraploid) 17.104
CNS0095605Slightly white alabastrum(tetraploid) 25.032
CNS0095606Slightly white alabastrum(tetraploid) 313.994
CNS0095607Whole white alabastrum(tetraploid) 14.094
CNS0095608Whole white alabastrum(tetraploid) 22.846
CNS0095609Whole white alabastrum(tetraploid) 39.209
CNS0095610Silvery flower (tetraploid) 18.922
CNS0095611Silvery flower (tetraploid) 27.572
CNS0095612Silvery flower (tetraploid) 35.530
CNS0095613Golden flower (tetraploid) 12.409
CNS0095614Golden flower (tetraploid) 25.207
CNS0095615Golden flower (tetraploid) 33.815
CRA001975CRR073297Stem 111.435
CRR073298Stem 211.271
CRR073299Stem 39.477
CRR073300Leaf 18.701
CRR073301Leaf 29.607
CRR073302Leaf 37.577
CRR073303Juvenile bud 17.127
CRR073304Juvenile bud 23.292
CRR073305Juvenile bud 39.732
CRR073306Third green 11.083
CRR073307Third green 20.609
CRR073308Third green 31.634
CRR073309Second white 12.254
CRR073310Second white 22.165
CRR073311Second white 32.550
CRR073312Silver flowering 11.835
CRR073313Silver flowering 21.730
CRR073314Silver flowering 31.811
CRR073315Gold flowering 15.054
CRR073316Gold flowering 210.134
CRR073317Gold flowering 34.179
CRR073318Tawny withering 19.413
CRR073319Tawny withering 28.267
CRR073320Tawny withering 39.045