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Detail information of GWHGAAZE033535
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
NP_001275051.1
5.6756E-135
choline monooxygenase, chloroplastic-like [Solanum tuberosum]
COG
YP_001275338.1
2E-37
Rieske (2Fe-2S) domain-containing protein
Swissprot
tr|Q9SZR0|CHMO_ARATH
5E-118
Choline monooxygenase, chloroplastic (Precursor)
trEMBL
tr|M1BRF2|M1BRF2_SOLTU
1E-135
Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400051201}
TAIR10
AT4G29890.1
4E-96
choline monooxygenase, putative (CMO-like)
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000108
gene
418803
421669
-
GWHAAZE00000108
mRNA
418803
421669
-
GWHAAZE00000108
exon
421626
421669
-
GWHAAZE00000108
exon
421230
421293
-
GWHAAZE00000108
exon
420510
420584
-
GWHAAZE00000108
exon
420190
420399
-
GWHAAZE00000108
exon
419634
419729
-
GWHAAZE00000108
exon
419014
419135
-
GWHAAZE00000108
exon
418803
418896
-
GWHAAZE00000108
CDS
421626
421669
-
GWHAAZE00000108
CDS
421230
421293
-
GWHAAZE00000108
CDS
420510
420584
-
GWHAAZE00000108
CDS
420190
420399
-
GWHAAZE00000108
CDS
419634
419729
-
GWHAAZE00000108
CDS
419014
419135
-
GWHAAZE00000108
CDS
418803
418896
-
Transcript Sequence
>GWHTAAZE033574 TATACTGAACAGATTAAAGATGCTCGTGATTATTTTACCGGCAGGTTAGGAAATGTGGAATATGTGGTATGCAGGGATGATAATGGAGAAGTAAATGCATTTCATAATGGATGGACATACGGGTTGGATGGAGCACTTCTCAAGGCAACTAGATTAACAGGAATCAAGAACTTCAATGTGAATGAATTTGGGCTTGTTCCACTGAAAGTAGCTATATGGGGCCCATTTGTTCTTCTCAATTTGGAAAAGGATGTTGTTCCTCAACCAGAATCTGATAACATTGTAGGCAATGAGTGGCTCGGTAGTTCATCAGAGATACTGAGTACCAATGGAGTCGATTCTTCGTTGAGTTATCTTTGCAGACGCGAGTATACTATTGAATGTAATTGGAAGGTGTTTTGTGACAATTACTTAGATGGTGGCTATCATGTACCATATGCCCATAAGGGACTTGCATCTGGTCTTAAGCTTGATTCTTACTCAACCACGATATTTGAGAAGGTTAGCATCCAAGGATGTGATGTTGGCCAAGTAGGAAGTCAAGATGATTATGATAGGCTCGGGTCAAATGCTTTATATGCATTTGTGTATCCAAACTTCATGATTAATAGGTATGGGCCGTGGATGGACACCAATTTAGTACTTCCATTGGGACACCGGAAGTGCCTAGTGATATTTGATTACTTTCTTGATGCGTCTCTCAAG
Network for GWHGAAZE033535
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF00848.20
Ring_hydroxyl_A
121
159
3.80E-09
Protein Sequence
>GWHPAAZE033556 YTEQIKDARDYFTGRLGNVEYVVCRDDNGEVNAFHNGWTYGLDGALLKATRLTGIKNFNVNEFGLVPLKVAIWGPFVLLNLEKDVVPQPESDNIVGNEWLGSSSEILSTNGVDSSLSYLCRREYTIECNWKVFCDNYLDGGYHVPYAHKGLASGLKLDSYSTTIFEKVSIQGCDVGQVGSQDDYDRLGSNALYAFVYPNFMINRYGPWMDTNLVLPLGHRKCLVIFDYFLDASLK
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K00499
CMO
Metabolic pathways
map01100
Glycine, serine and threonine metabolism
map00260
Gene Ontology
GO term
Ontology
Name
GO:0055114
biological_process
oxidation-reduction process
GO:0044237
biological_process
cellular metabolic process
GO:0016491
molecular_function
oxidoreductase activity
GO:0051537
molecular_function
2 iron, 2 sulfur cluster binding
GO:0005506
molecular_function
iron ion binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
6.575
SRR3591706
second leaf
9.507
SRR3591707
mature leaf
12.230
SRR3591708
Shoot apex
6.004
SRR3591709
Stem
11.314
SRR3591710
White floral bud
4.356
SRR3591711
White flower
7.448
SRR3591712
Green floral bud
3.485
SRR3591713
Yellow flower
11.115
SRP173429
SRR8316895
Juvenile bud stage
7.820
SRR8316896
Juvenile bud stage
9.768
SRR8316897
Juvenile bud stage
3.836
SRR8316894
Third green stage
3.226
SRR8316900
Third green stage
8.535
SRR8316901
Third green stage
8.824
SRR8316898
Complete white stage
8.264
SRR8316899
Complete white stage
17.735
SRR8316903
Complete white stage
13.154
SRR8316902
Silver flowering stage
11.336
SRR8316904
Silver flowering stage
14.505
SRR8316905
Silver flowering stage
5.969
SRR8316906
Gold flowering stage
23.840
SRR8316907
Gold flowering stage
23.297
SRR8316908
Gold flowering stage
22.247
SRP132670
SRR6706286
Control
3.082
SRR6706287
Light intensity 50%
3.982
SRR6706288
Light intensity 20%
3.924
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
5.405
CNS0095593
Slightly white alabastrum(diploid) 2
7.924
CNS0095594
Slightly white alabastrum(diploid) 3
3.844
CNS0095595
Whole white alabastrum(diploid) 2
6.907
CNS0095596
Whole white alabastrum(diploid) 3
5.604
CNS0095597
Whole white alabastrum(diploid) 4
4.198
CNS0095598
Silvery flower (diploied) 1
12.559
CNS0095599
Silvery flower (diploied) 2
11.398
CNS0095600
Silvery flower (diploied) 3
15.779
CNS0095601
Golden flower (diploid) 1
11.779
CNS0095602
Golden flower (diploid) 2
21.602
CNS0095603
Golden flower (diploid) 3
18.850
CNS0095604
Slightly white alabastrum(tetraploid) 1
7.521
CNS0095605
Slightly white alabastrum(tetraploid) 2
6.439
CNS0095606
Slightly white alabastrum(tetraploid) 3
11.801
CNS0095607
Whole white alabastrum(tetraploid) 1
3.944
CNS0095608
Whole white alabastrum(tetraploid) 2
5.106
CNS0095609
Whole white alabastrum(tetraploid) 3
10.977
CNS0095610
Silvery flower (tetraploid) 1
39.218
CNS0095611
Silvery flower (tetraploid) 2
36.601
CNS0095612
Silvery flower (tetraploid) 3
32.281
CNS0095613
Golden flower (tetraploid) 1
29.623
CNS0095614
Golden flower (tetraploid) 2
30.807
CNS0095615
Golden flower (tetraploid) 3
37.251
CRA001975
CRR073297
Stem 1
1.687
CRR073298
Stem 2
2.472
CRR073299
Stem 3
1.335
CRR073300
Leaf 1
3.472
CRR073301
Leaf 2
3.132
CRR073302
Leaf 3
0.701
CRR073303
Juvenile bud 1
1.117
CRR073304
Juvenile bud 2
1.897
CRR073305
Juvenile bud 3
2.527
CRR073306
Third green 1
1.123
CRR073307
Third green 2
1.785
CRR073308
Third green 3
1.076
CRR073309
Second white 1
5.804
CRR073310
Second white 2
4.277
CRR073311
Second white 3
4.389
CRR073312
Silver flowering 1
3.787
CRR073313
Silver flowering 2
3.483
CRR073314
Silver flowering 3
2.836
CRR073315
Gold flowering 1
6.345
CRR073316
Gold flowering 2
8.634
CRR073317
Gold flowering 3
6.999
CRR073318
Tawny withering 1
4.469
CRR073319
Tawny withering 2
5.612
CRR073320
Tawny withering 3
2.902