Gene detail

Detail information of GWHGAAZE033527

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004309860.1	0	PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Fragaria vesca subsp. vesca]
COG	YP_006369323.1	4E-27	Fatty acid desaturase
Swissprot	tr\|P22243\|STAD_CARTI	0	Acyl-[acyl-carrier-protein] desaturase, chloroplastic (Precursor)
trEMBL	tr\|O24497\|O24497_HELAN	0	Acyl-[acyl-carrier-protein] desaturase {ECO:0000256\|RuleBase:RU000582}
TAIR10	AT2G43710.1	0	Plant stearoyl-acyl-carrier-protein desaturase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	1744726	1746674	+
GWHAAZE00000104	mRNA	1744726	1746674	+
GWHAAZE00000104	exon	1744726	1745229	+
GWHAAZE00000104	exon	1746114	1746674	+
GWHAAZE00000104	CDS	1744726	1745229	+
GWHAAZE00000104	CDS	1746114	1746674	+

Transcript Sequence
>GWHTAAZE033566 GAGGTGGAAAGTCTCAAGAAGCCATTTAGCCCACCACGTGAGGTTCACGTTCAAGTAACACACTCAATGCCACCACAAAAGATTGAGATATTCAAATCGATAGAGGGTTGGGCCGAGAAGAACATATTGACTTACCTGAAACCGGTGGAGAAATGCTGGCAACCCCAGGATTTTTTGCCAGACCCGGCGTCGGATGGTTTTGATGAACAAGTGAGGGAACTAAGGGCGAGGGCAAAGGAGCTACCGGATGAGTACTTTGTTGTTTTGGTTGGAGATATGATCACTGAAGAAGCACTTCCAACTTACCAAACAATGCTTAATACTTTAGATGGGGTTCGTGATGAAACGGGGGCTAGCCTTACTCCGTGGGCGATTTGGACGAGGGCTTGGACCGCCGAAGAGAACCGGCATGGCGACCTTCTCAATAAGTATTTGTATCTGTCGGGACGAGTGGATATGAGGCAAATTGAGAAGACTATTCAGTATCTGATTGGCTCAGGAATGGATCCTCGGACCGAAAATAGCCCCTACCTCGGCTTCATCTACACATCATTCCAAGAACGAGCAACTTTTATCTCCCATGGAAATACAGCTCGACACGCCAAGGATTTGGGTGATCTCAAGCTAGCCCAAATCTGCGGTACTATCGCTGCGGATGAAAAACGCCACGAAACCGCCTACACCAAAATAGTAGAGAAGCTCTTTGAGATCGACCCTGATGGTACCATCCTTTCATTTGCCGATATGATGAGGAAGAAAATCTCAATGCCAGCCCACTTAATGTACGATGGCCGTGATGATAACCTTTTTGAGCACTTCTCGGCTGTGGCTCAGCGGCTTGAGGTGTACACAGCTCGAGACTATGCTGATATATTGGAGTTCTTGGTTGAGAGATGGAAAGTGGCTGACCTAAACGGACTTTCAGGTGAGGGTCGAAAAGCTCAAGACTATTTATGTGGTTTGGCTCCAAGGATTCGAAGGCTTGAGGAGAGAGCTCAAGCACGGGCTAAGGTGGGACCCGCCATGCCTTTTAGCTGGATATTCGATAGACAAGTGAAGATTTGA

Network for GWHGAAZE033527

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03405.15	FA_desaturase_2	27	348	3.10E-158

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03921	FAB2, SSI2, desA1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

GO term	Ontology	Name
GO:0006631	biological_process	fatty acid metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0045300	molecular_function	acyl-[acyl-carrier-protein] desaturase activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	81.575
	SRR3591706	second leaf	100.649
	SRR3591707	mature leaf	90.268
	SRR3591708	Shoot apex	60.022
	SRR3591709	Stem	63.902
	SRR3591710	White floral bud	545.640
	SRR3591711	White flower	208.163
	SRR3591712	Green floral bud	191.000
	SRR3591713	Yellow flower	111.253
SRP173429	SRR8316895	Juvenile bud stage	95.584
	SRR8316896	Juvenile bud stage	144.832
	SRR8316897	Juvenile bud stage	66.678
	SRR8316894	Third green stage	53.886
	SRR8316900	Third green stage	234.161
	SRR8316901	Third green stage	207.620
	SRR8316898	Complete white stage	408.774
	SRR8316899	Complete white stage	269.772
	SRR8316903	Complete white stage	473.754
	SRR8316902	Silver flowering stage	437.050
	SRR8316904	Silver flowering stage	508.843
	SRR8316905	Silver flowering stage	338.378
	SRR8316906	Gold flowering stage	494.758
	SRR8316907	Gold flowering stage	519.533
	SRR8316908	Gold flowering stage	373.928
SRP132670	SRR6706286	Control	230.402
	SRR6706287	Light intensity 50%	232.038
	SRR6706288	Light intensity 20%	237.985
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	103.775
	CNS0095593	Slightly white alabastrum(diploid) 2	108.047
	CNS0095594	Slightly white alabastrum(diploid) 3	100.786
	CNS0095595	Whole white alabastrum(diploid) 2	118.973
	CNS0095596	Whole white alabastrum(diploid) 3	138.215
	CNS0095597	Whole white alabastrum(diploid) 4	100.202
	CNS0095598	Silvery flower (diploied) 1	196.850
	CNS0095599	Silvery flower (diploied) 2	201.155
	CNS0095600	Silvery flower (diploied) 3	1105.603
	CNS0095601	Golden flower (diploid) 1	258.271
	CNS0095602	Golden flower (diploid) 2	592.261
	CNS0095603	Golden flower (diploid) 3	577.101
	CNS0095604	Slightly white alabastrum(tetraploid) 1	143.276
	CNS0095605	Slightly white alabastrum(tetraploid) 2	127.992
	CNS0095606	Slightly white alabastrum(tetraploid) 3	171.921
	CNS0095607	Whole white alabastrum(tetraploid) 1	114.568
	CNS0095608	Whole white alabastrum(tetraploid) 2	127.307
	CNS0095609	Whole white alabastrum(tetraploid) 3	265.646
	CNS0095610	Silvery flower (tetraploid) 1	890.020
	CNS0095611	Silvery flower (tetraploid) 2	1325.248
	CNS0095612	Silvery flower (tetraploid) 3	1907.216
	CNS0095613	Golden flower (tetraploid) 1	771.563
	CNS0095614	Golden flower (tetraploid) 2	1295.963
	CNS0095615	Golden flower (tetraploid) 3	1036.335
CRA001975	CRR073297	Stem 1	117.097
	CRR073298	Stem 2	112.337
	CRR073299	Stem 3	144.193
	CRR073300	Leaf 1	155.536
	CRR073301	Leaf 2	150.479
	CRR073302	Leaf 3	182.278
	CRR073303	Juvenile bud 1	208.223
	CRR073304	Juvenile bud 2	256.177
	CRR073305	Juvenile bud 3	193.557
	CRR073306	Third green 1	1842.060
	CRR073307	Third green 2	1234.699
	CRR073308	Third green 3	1158.602
	CRR073309	Second white 1	1425.782
	CRR073310	Second white 2	967.921
	CRR073311	Second white 3	756.363
	CRR073312	Silver flowering 1	393.671
	CRR073313	Silver flowering 2	413.298
	CRR073314	Silver flowering 3	364.701
	CRR073315	Gold flowering 1	86.933
	CRR073316	Gold flowering 2	82.373
	CRR073317	Gold flowering 3	81.868
	CRR073318	Tawny withering 1	109.687
	CRR073319	Tawny withering 2	71.263
	CRR073320	Tawny withering 3	104.654