Detail information of GWHGAAZE033352


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273749.10PREDICTED: SWI/SNF complex component SNF12 homolog [Vitis vinifera]
Swissprottr|Q9FMT4|SNF12_ARATH0SWI/SNF complex component SNF12 homolog
trEMBLtr|F6H3Y6|F6H3Y6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47026.1}
TAIR10AT5G14170.10SWIB/MDM2 domain superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene52200355222165+
GWHAAZE00000094mRNA52200355222165+
GWHAAZE00000094exon52200355221287+
GWHAAZE00000094exon52217195222165+
GWHAAZE00000094CDS52200355221287+
GWHAAZE00000094CDS52217195221794+
GWHAAZE00000094three_prime_UTR52217955222165+
Transcript Sequence

Network for GWHGAAZE033352

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02201.19SWIB2252965.70E-22
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b

KEGG pathway

KO Enzyme pathway mapID
K11650SMARCD Thermogenesis map04714

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.453
SRR3591706second leaf13.772
SRR3591707mature leaf16.053
SRR3591708Shoot apex29.759
SRR3591709Stem28.174
SRR3591710White floral bud18.356
SRR3591711White flower26.426
SRR3591712Green floral bud20.871
SRR3591713Yellow flower17.519
SRP173429 SRR8316895Juvenile bud stage 13.492
SRR8316896Juvenile bud stage 19.656
SRR8316897Juvenile bud stage 7.053
SRR8316894Third green stage 7.665
SRR8316900Third green stage 20.420
SRR8316901Third green stage 21.197
SRR8316898Complete white stage 9.225
SRR8316899Complete white stage 25.561
SRR8316903Complete white stage 17.459
SRR8316902Silver flowering stage9.853
SRR8316904Silver flowering stage14.678
SRR8316905Silver flowering stage7.715
SRR8316906Gold flowering stage 25.173
SRR8316907Gold flowering stage 21.861
SRR8316908Gold flowering stage 22.961
SRP132670SRR6706286Control16.514
SRR6706287Light intensity 50%17.207
SRR6706288Light intensity 20%18.053
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.031
CNS0095593Slightly white alabastrum(diploid) 218.367
CNS0095594Slightly white alabastrum(diploid) 318.194
CNS0095595Whole white alabastrum(diploid) 216.837
CNS0095596Whole white alabastrum(diploid) 313.677
CNS0095597Whole white alabastrum(diploid) 413.492
CNS0095598Silvery flower (diploied) 126.942
CNS0095599Silvery flower (diploied) 224.704
CNS0095600Silvery flower (diploied) 332.311
CNS0095601Golden flower (diploid) 122.664
CNS0095602Golden flower (diploid) 233.001
CNS0095603Golden flower (diploid) 331.117
CNS0095604Slightly white alabastrum(tetraploid) 117.823
CNS0095605Slightly white alabastrum(tetraploid) 216.730
CNS0095606Slightly white alabastrum(tetraploid) 330.000
CNS0095607Whole white alabastrum(tetraploid) 113.260
CNS0095608Whole white alabastrum(tetraploid) 28.806
CNS0095609Whole white alabastrum(tetraploid) 315.146
CNS0095610Silvery flower (tetraploid) 127.516
CNS0095611Silvery flower (tetraploid) 232.304
CNS0095612Silvery flower (tetraploid) 321.041
CNS0095613Golden flower (tetraploid) 118.873
CNS0095614Golden flower (tetraploid) 226.178
CNS0095615Golden flower (tetraploid) 328.096
CRA001975CRR073297Stem 131.589
CRR073298Stem 228.739
CRR073299Stem 334.303
CRR073300Leaf 127.763
CRR073301Leaf 224.051
CRR073302Leaf 324.320
CRR073303Juvenile bud 127.818
CRR073304Juvenile bud 221.064
CRR073305Juvenile bud 339.760
CRR073306Third green 111.109
CRR073307Third green 210.586
CRR073308Third green 313.146
CRR073309Second white 123.566
CRR073310Second white 219.763
CRR073311Second white 316.793
CRR073312Silver flowering 114.954
CRR073313Silver flowering 216.715
CRR073314Silver flowering 310.035
CRR073315Gold flowering 119.981
CRR073316Gold flowering 225.718
CRR073317Gold flowering 322.088
CRR073318Tawny withering 131.947
CRR073319Tawny withering 229.644
CRR073320Tawny withering 332.822