Gene detail

Detail information of GWHGAAZE033279

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010108308.1	4.05614E-25	Transcription initiation factor TFIID subunit 10 [Morus notabilis]
Swissprot	tr\|O04173\|TAF10_ARATH	3E-22	Transcription initiation factor TFIID subunit 10
trEMBL	tr\|W9RZ86\|W9RZ86_9ROSA	2E-25	Transcription initiation factor TFIID subunit 10 {ECO:0000313\|EMBL:EXC18788.1}
TAIR10	AT4G31720.2	2E-18	TBP-associated factor II 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4145834	4149992	-
GWHAAZE00000094	mRNA	4145834	4149992	-
GWHAAZE00000094	exon	4149808	4149992	-
GWHAAZE00000094	exon	4149637	4149701	-
GWHAAZE00000094	exon	4148721	4148812	-
GWHAAZE00000094	exon	4148120	4148179	-
GWHAAZE00000094	exon	4147950	4148022	-
GWHAAZE00000094	exon	4147369	4147431	-
GWHAAZE00000094	exon	4146124	4146181	-
GWHAAZE00000094	exon	4145978	4146028	-
GWHAAZE00000094	exon	4145834	4145890	-
GWHAAZE00000094	five_prime_UTR	4149895	4149992	-
GWHAAZE00000094	CDS	4149808	4149894	-
GWHAAZE00000094	CDS	4149637	4149701	-
GWHAAZE00000094	CDS	4148721	4148812	-
GWHAAZE00000094	CDS	4148120	4148179	-
GWHAAZE00000094	CDS	4147950	4148022	-
GWHAAZE00000094	CDS	4147369	4147431	-
GWHAAZE00000094	CDS	4146124	4146181	-
GWHAAZE00000094	CDS	4145978	4146028	-
GWHAAZE00000094	CDS	4145834	4145890	-

Transcript Sequence
>GWHTAAZE033318 ATAGAACTACTGCTTCAAGGAGGCTAAATAAAAAGTAGTGGATTTAAATAAAAGTGTTGTTCCAACAAAACCTTCTCTTCATTCCTGTCGGTAAGAGGATGAACCAGCAGTCGAATGATGGCCGACATGACGAAGACACTGCATTATCAGATTTTCTCGCATCCTTGATGGATTATACCCCTACGATCCCAGACGAATTGGCAGAACATTACTTAGCCAAAAGTGGGTTCCAATGTCCTGATGTACGATTGAAGGTGCCCGAAAGTTTATCAAGAGCAGACATTGATTTGTCTTCCGATTCAGAGAATGAAGATGATGATGTGGAAGACCAAATTGCAGATGAAGCGGATGTTGAATATGTCAGATGGGAAGAACTTGGGGAAATGTTTGACTGGGAAAAAAATATCCATATGCCAACCTGTAACATTGCCGACTGCGTTAAGGATGGTGGTCTCTTTGACGTCGTAGTTGATCAAATTAGGCTGGTGGCAGTTGCTACCCAGAAGTTCATTGCTGAGGTTGCAACTGATGCTCTTCACCACTGCAAGGCTAGGCAGTCATCAATAGTCAAAGACAAAAGAGATAAGCAACCAAAGGATAAACGTTTAATCTTGGCAATGGATGACCTCTCAAAGGCTCTACGAGAGGATCGTGGTAAATTTATGATACCATCAGCTATATCTGTTGTTTTCAATCGTACATGA

Network for GWHGAAZE033279

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03540.14	TFIID_30kDa	28	52	1.20E-07
PF03540.14	TFIID_30kDa	127	152	1.60E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03134	TAF10	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006352	biological_process	DNA-templated transcription, initiation
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.363
	SRR3591706	second leaf	28.637
	SRR3591707	mature leaf	22.700
	SRR3591708	Shoot apex	45.460
	SRR3591709	Stem	34.131
	SRR3591710	White floral bud	35.734
	SRR3591711	White flower	37.203
	SRR3591712	Green floral bud	46.264
	SRR3591713	Yellow flower	36.102
SRP173429	SRR8316895	Juvenile bud stage	39.345
	SRR8316896	Juvenile bud stage	55.381
	SRR8316897	Juvenile bud stage	26.554
	SRR8316894	Third green stage	22.748
	SRR8316900	Third green stage	67.836
	SRR8316901	Third green stage	64.704
	SRR8316898	Complete white stage	21.931
	SRR8316899	Complete white stage	68.369
	SRR8316903	Complete white stage	33.303
	SRR8316902	Silver flowering stage	25.702
	SRR8316904	Silver flowering stage	28.850
	SRR8316905	Silver flowering stage	12.553
	SRR8316906	Gold flowering stage	44.014
	SRR8316907	Gold flowering stage	47.487
	SRR8316908	Gold flowering stage	43.657
SRP132670	SRR6706286	Control	59.655
	SRR6706287	Light intensity 50%	58.600
	SRR6706288	Light intensity 20%	67.634
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.946
	CNS0095593	Slightly white alabastrum(diploid) 2	53.118
	CNS0095594	Slightly white alabastrum(diploid) 3	63.383
	CNS0095595	Whole white alabastrum(diploid) 2	52.690
	CNS0095596	Whole white alabastrum(diploid) 3	49.684
	CNS0095597	Whole white alabastrum(diploid) 4	47.305
	CNS0095598	Silvery flower (diploied) 1	36.546
	CNS0095599	Silvery flower (diploied) 2	36.098
	CNS0095600	Silvery flower (diploied) 3	41.094
	CNS0095601	Golden flower (diploid) 1	37.053
	CNS0095602	Golden flower (diploid) 2	38.568
	CNS0095603	Golden flower (diploid) 3	36.500
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.452
	CNS0095605	Slightly white alabastrum(tetraploid) 2	54.735
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.003
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.873
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.753
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.257
	CNS0095610	Silvery flower (tetraploid) 1	40.419
	CNS0095611	Silvery flower (tetraploid) 2	41.418
	CNS0095612	Silvery flower (tetraploid) 3	40.449
	CNS0095613	Golden flower (tetraploid) 1	30.685
	CNS0095614	Golden flower (tetraploid) 2	32.512
	CNS0095615	Golden flower (tetraploid) 3	31.360
CRA001975	CRR073297	Stem 1	46.044
	CRR073298	Stem 2	44.800
	CRR073299	Stem 3	51.800
	CRR073300	Leaf 1	48.116
	CRR073301	Leaf 2	54.879
	CRR073302	Leaf 3	46.103
	CRR073303	Juvenile bud 1	46.298
	CRR073304	Juvenile bud 2	46.394
	CRR073305	Juvenile bud 3	47.926
	CRR073306	Third green 1	18.378
	CRR073307	Third green 2	22.677
	CRR073308	Third green 3	18.220
	CRR073309	Second white 1	23.038
	CRR073310	Second white 2	26.561
	CRR073311	Second white 3	17.593
	CRR073312	Silver flowering 1	11.269
	CRR073313	Silver flowering 2	14.341
	CRR073314	Silver flowering 3	16.322
	CRR073315	Gold flowering 1	23.291
	CRR073316	Gold flowering 2	30.881
	CRR073317	Gold flowering 3	26.178
	CRR073318	Tawny withering 1	41.826
	CRR073319	Tawny withering 2	38.891
	CRR073320	Tawny withering 3	37.178