Detail information of GWHGAAZE033265


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008245912.12.27369E-36PREDICTED: DNA polymerase zeta processivity subunit-like isoform X2 [Prunus mume]
Swissprottr|Q94FL5|REV7_ARATH1E-26DNA polymerase zeta processivity subunit
trEMBLtr|M5WMZ7|M5WMZ7_PRUPE9E-36Uncharacterized protein {ECO:0000313|EMBL:EMJ15167.1}
TAIR10AT1G16590.15E-22DNA-binding HORMA family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene37638303764887-
GWHAAZE00000094mRNA37638303764887-
GWHAAZE00000094exon37638303763984-
GWHAAZE00000094exon37646743764754-
GWHAAZE00000094exon37648573764887-
GWHAAZE00000094CDS37648573764887-
GWHAAZE00000094CDS37646743764754-
GWHAAZE00000094CDS37638303763984-
Transcript Sequence

Network for GWHGAAZE033265

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02301.19HORMA17783.50E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13728MAD2L2 Cell cycle map04110
Oocyte meiosismap04114
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.011
SRR3591706second leaf3.635
SRR3591707mature leaf8.578
SRR3591708Shoot apex10.085
SRR3591709Stem18.382
SRR3591710White floral bud20.329
SRR3591711White flower25.835
SRR3591712Green floral bud17.046
SRR3591713Yellow flower20.775
SRP173429 SRR8316895Juvenile bud stage 17.866
SRR8316896Juvenile bud stage 30.721
SRR8316897Juvenile bud stage 8.513
SRR8316894Third green stage 12.175
SRR8316900Third green stage 36.096
SRR8316901Third green stage 43.062
SRR8316898Complete white stage 28.870
SRR8316899Complete white stage 72.001
SRR8316903Complete white stage 39.584
SRR8316902Silver flowering stage28.972
SRR8316904Silver flowering stage31.132
SRR8316905Silver flowering stage18.316
SRR8316906Gold flowering stage 49.960
SRR8316907Gold flowering stage 49.909
SRR8316908Gold flowering stage 39.226
SRP132670SRR6706286Control24.429
SRR6706287Light intensity 50%28.179
SRR6706288Light intensity 20%31.038
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.820
CNS0095593Slightly white alabastrum(diploid) 211.912
CNS0095594Slightly white alabastrum(diploid) 317.577
CNS0095595Whole white alabastrum(diploid) 216.931
CNS0095596Whole white alabastrum(diploid) 313.340
CNS0095597Whole white alabastrum(diploid) 419.385
CNS0095598Silvery flower (diploied) 127.193
CNS0095599Silvery flower (diploied) 223.022
CNS0095600Silvery flower (diploied) 339.867
CNS0095601Golden flower (diploid) 137.211
CNS0095602Golden flower (diploid) 240.642
CNS0095603Golden flower (diploid) 337.105
CNS0095604Slightly white alabastrum(tetraploid) 113.425
CNS0095605Slightly white alabastrum(tetraploid) 210.921
CNS0095606Slightly white alabastrum(tetraploid) 329.251
CNS0095607Whole white alabastrum(tetraploid) 110.899
CNS0095608Whole white alabastrum(tetraploid) 213.274
CNS0095609Whole white alabastrum(tetraploid) 324.010
CNS0095610Silvery flower (tetraploid) 128.043
CNS0095611Silvery flower (tetraploid) 244.635
CNS0095612Silvery flower (tetraploid) 345.629
CNS0095613Golden flower (tetraploid) 119.203
CNS0095614Golden flower (tetraploid) 229.045
CNS0095615Golden flower (tetraploid) 322.523
CRA001975CRR073297Stem 17.833
CRR073298Stem 212.723
CRR073299Stem 39.207
CRR073300Leaf 111.039
CRR073301Leaf 27.994
CRR073302Leaf 35.961
CRR073303Juvenile bud 16.540
CRR073304Juvenile bud 26.923
CRR073305Juvenile bud 39.482
CRR073306Third green 13.884
CRR073307Third green 24.958
CRR073308Third green 36.406
CRR073309Second white 113.063
CRR073310Second white 29.734
CRR073311Second white 35.007
CRR073312Silver flowering 14.529
CRR073313Silver flowering 21.932
CRR073314Silver flowering 37.361
CRR073315Gold flowering 17.079
CRR073316Gold flowering 28.165
CRR073317Gold flowering 36.765
CRR073318Tawny withering 16.055
CRR073319Tawny withering 213.841
CRR073320Tawny withering 34.241