Detail information of GWHGAAZE033234


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002324007.26.5618E-158hypothetical protein POPTR_0017s10860g [Populus trichocarpa]
Swissprottr|Q9FL07|ATL46_ARATH3E-132RING-H2 finger protein ATL46
trEMBLtr|F6HV15|F6HV15_VITVI3E-163Putative uncharacterized protein {ECO:0000313|EMBL:CCB58533.1}
TAIR10AT5G40250.17E-87RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene33142393315327+
GWHAAZE00000094mRNA33142393315327+
GWHAAZE00000094exon33142393315327+
GWHAAZE00000094CDS33142393315327+
Transcript Sequence

Network for GWHGAAZE033234

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21351789.50E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.703
SRR3591706second leaf0.681
SRR3591707mature leaf0.157
SRR3591708Shoot apex0.932
SRR3591709Stem20.819
SRR3591710White floral bud0.596
SRR3591711White flower2.049
SRR3591712Green floral bud3.443
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.645
SRR8316896Juvenile bud stage 0.514
SRR8316897Juvenile bud stage 0.209
SRR8316894Third green stage 0.442
SRR8316900Third green stage 1.037
SRR8316901Third green stage 0.768
SRR8316898Complete white stage 0.202
SRR8316899Complete white stage 0.679
SRR8316903Complete white stage 0.350
SRR8316902Silver flowering stage0.345
SRR8316904Silver flowering stage0.562
SRR8316905Silver flowering stage0.199
SRR8316906Gold flowering stage 0.520
SRR8316907Gold flowering stage 0.094
SRR8316908Gold flowering stage 0.185
SRP132670SRR6706286Control0.087
SRR6706287Light intensity 50%0.321
SRR6706288Light intensity 20%0.395
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.680
CNS0095593Slightly white alabastrum(diploid) 21.952
CNS0095594Slightly white alabastrum(diploid) 31.194
CNS0095595Whole white alabastrum(diploid) 21.197
CNS0095596Whole white alabastrum(diploid) 30.464
CNS0095597Whole white alabastrum(diploid) 41.268
CNS0095598Silvery flower (diploied) 10.050
CNS0095599Silvery flower (diploied) 20.353
CNS0095600Silvery flower (diploied) 30.112
CNS0095601Golden flower (diploid) 10.105
CNS0095602Golden flower (diploid) 20.167
CNS0095603Golden flower (diploid) 30.197
CNS0095604Slightly white alabastrum(tetraploid) 10.571
CNS0095605Slightly white alabastrum(tetraploid) 20.443
CNS0095606Slightly white alabastrum(tetraploid) 31.308
CNS0095607Whole white alabastrum(tetraploid) 10.328
CNS0095608Whole white alabastrum(tetraploid) 20.158
CNS0095609Whole white alabastrum(tetraploid) 30.108
CNS0095610Silvery flower (tetraploid) 10.052
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.032
CNS0095613Golden flower (tetraploid) 10.081
CNS0095614Golden flower (tetraploid) 20.162
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.265
CRR073298Stem 20.711
CRR073299Stem 30.306
CRR073300Leaf 10.607
CRR073301Leaf 20.580
CRR073302Leaf 30.170
CRR073303Juvenile bud 10.076
CRR073304Juvenile bud 20.168
CRR073305Juvenile bud 30.306
CRR073306Third green 10.039
CRR073307Third green 20.418
CRR073308Third green 30.089
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.048
CRR073312Silver flowering 10.389
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.111
CRR073315Gold flowering 10.920
CRR073316Gold flowering 20.840
CRR073317Gold flowering 30.671
CRR073318Tawny withering 19.196
CRR073319Tawny withering 23.163
CRR073320Tawny withering 311.522