Gene detail

Detail information of GWHGAAZE033231

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279099.1	1.0541E-166	PREDICTED: uncharacterized protein LOC100247524 [Vitis vinifera]
trEMBL	tr\|D7TWR7\|D7TWR7_VITVI	4E-167	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI34942.3}
TAIR10	AT5G14790.1	3E-108	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	3275975	3277989	+
GWHAAZE00000094	mRNA	3275975	3277989	+
GWHAAZE00000094	exon	3275975	3276247	+
GWHAAZE00000094	exon	3276422	3276528	+
GWHAAZE00000094	exon	3276659	3276791	+
GWHAAZE00000094	exon	3276913	3277107	+
GWHAAZE00000094	exon	3277690	3277989	+
GWHAAZE00000094	CDS	3275975	3276247	+
GWHAAZE00000094	CDS	3276422	3276528	+
GWHAAZE00000094	CDS	3276659	3276791	+
GWHAAZE00000094	CDS	3276913	3277107	+
GWHAAZE00000094	CDS	3277690	3277989	+

Transcript Sequence
>GWHTAAZE033270 ATGTCGGAGAAGGCTCTCAAAGATCACAATGTGCTACCTGTAGCTGACAGGAAGAATGAATGCTCCAGTAAAGGGAGTTTTTCTAAGCCTTGTGATGAGCACGTTACTGAAAAAATTGAAGAAAGAGAAAGAAAGAACACTCCCTCCTTGGTTGGAGCAACTACAAATGGAGATGAGATTGTGAATTCTGGGTCAGAAGTGGGAATTGTAGAAGTGGAGTATGTTGAATCAGAGAATCTCAATGATGTTGAAGATGTGAATATGACTCTCAAGATGCTCTTAGCTGGCCTAGAGTCCAAAGAATGGGTTTCAGTTTGCGACGCACTCAATAATGTGCGCCGGTTGTCTGTTTTCCACAAGAAAACAATGTGTGATATGTTGGAAAATGTGATCACCCTCGTTGTGAAGTCCCTGAAGAATCCGAGAAGTGCTGTTTGTAAAACTGCTATCATGACATGTGCAGACATTTTCAAGGCATATGGTGATGAAATCATCGATTCTTTGGATCCAATGCTTGTACAACTTCTCCTCAAGTCTTCACAAGACAAACGATTTGTATGTGAGGCAGCTGAAAGAGCTTTAATAGCTATGACTACTTGGTTATCCCCCGTTTTGCTGTTACCAAAGTTGCAACCTTATCTTAAAAACAGGAATCCTCGAATTCGAGCAAAGGCTTCAATGTTCTTTTCTCGCAGTGTACCACGACTGGGTGTTGAGGGTATCAAAACGTATGGGATTGAGAAATTGATCCAAATAGCTGCCACTCAGCTGAGTGACCAGCTTCCAGAGTCCAGGGAAGCTGCCCGTACTCTCCTGTTGGAGCTTCAAACCATTTATGAGCAATCTCAAGAACTGGCACCAACTACTAGTACATTATCAGAGGAGGAGGCCCGAGAAGAGGTGGGTTCATGGGAGCACTTCTGCCAATCAAATCTCTCACGCTTAAGCGCTCAAGCCGTTCTTCGTGTGACCAATATTGCTCGGCCAAGTCTTGTTTTGGGTTCTTAG

Network for GWHGAAZE033231

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12348.9	CLASP_N	122	283	5.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.242
	SRR3591706	second leaf	15.167
	SRR3591707	mature leaf	7.764
	SRR3591708	Shoot apex	32.803
	SRR3591709	Stem	15.534
	SRR3591710	White floral bud	11.789
	SRR3591711	White flower	6.684
	SRR3591712	Green floral bud	23.143
	SRR3591713	Yellow flower	3.956
SRP173429	SRR8316895	Juvenile bud stage	12.730
	SRR8316896	Juvenile bud stage	16.706
	SRR8316897	Juvenile bud stage	10.710
	SRR8316894	Third green stage	6.190
	SRR8316900	Third green stage	18.122
	SRR8316901	Third green stage	16.464
	SRR8316898	Complete white stage	4.829
	SRR8316899	Complete white stage	21.581
	SRR8316903	Complete white stage	4.162
	SRR8316902	Silver flowering stage	2.187
	SRR8316904	Silver flowering stage	2.614
	SRR8316905	Silver flowering stage	0.692
	SRR8316906	Gold flowering stage	1.730
	SRR8316907	Gold flowering stage	1.258
	SRR8316908	Gold flowering stage	4.481
SRP132670	SRR6706286	Control	12.599
	SRR6706287	Light intensity 50%	14.356
	SRR6706288	Light intensity 20%	15.009
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.477
	CNS0095593	Slightly white alabastrum(diploid) 2	17.123
	CNS0095594	Slightly white alabastrum(diploid) 3	13.225
	CNS0095595	Whole white alabastrum(diploid) 2	13.830
	CNS0095596	Whole white alabastrum(diploid) 3	13.646
	CNS0095597	Whole white alabastrum(diploid) 4	13.397
	CNS0095598	Silvery flower (diploied) 1	9.166
	CNS0095599	Silvery flower (diploied) 2	8.822
	CNS0095600	Silvery flower (diploied) 3	7.113
	CNS0095601	Golden flower (diploid) 1	6.617
	CNS0095602	Golden flower (diploid) 2	5.127
	CNS0095603	Golden flower (diploid) 3	5.093
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.124
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.836
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.109
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.477
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.383
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.718
	CNS0095610	Silvery flower (tetraploid) 1	7.588
	CNS0095611	Silvery flower (tetraploid) 2	8.914
	CNS0095612	Silvery flower (tetraploid) 3	6.673
	CNS0095613	Golden flower (tetraploid) 1	2.158
	CNS0095614	Golden flower (tetraploid) 2	4.844
	CNS0095615	Golden flower (tetraploid) 3	1.582
CRA001975	CRR073297	Stem 1	21.696
	CRR073298	Stem 2	21.345
	CRR073299	Stem 3	25.274
	CRR073300	Leaf 1	22.883
	CRR073301	Leaf 2	19.500
	CRR073302	Leaf 3	23.845
	CRR073303	Juvenile bud 1	25.829
	CRR073304	Juvenile bud 2	15.572
	CRR073305	Juvenile bud 3	27.560
	CRR073306	Third green 1	1.701
	CRR073307	Third green 2	3.255
	CRR073308	Third green 3	4.320
	CRR073309	Second white 1	1.649
	CRR073310	Second white 2	1.060
	CRR073311	Second white 3	0.317
	CRR073312	Silver flowering 1	0.089
	CRR073313	Silver flowering 2	0.953
	CRR073314	Silver flowering 3	0.820
	CRR073315	Gold flowering 1	6.197
	CRR073316	Gold flowering 2	5.888
	CRR073317	Gold flowering 3	6.992
	CRR073318	Tawny withering 1	17.122
	CRR073319	Tawny withering 2	13.373
	CRR073320	Tawny withering 3	21.108