Detail information of GWHGAAZE033187


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009599825.10PREDICTED: probable pectate lyase P59 isoform X1 [Nicotiana tomentosiformis]
COGYP_001628843.16E-30hypothetical protein Bpet0241
Swissprottr|P15722|PLY59_SOLLC0Probable pectate lyase P59 (Precursor)
trEMBLtr|K4BGT7|K4BGT7_SOLLC0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT1G14420.12E-155Pectate lyase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene26871212688744-
GWHAAZE00000094mRNA26871212688744-
GWHAAZE00000094exon26871212687800-
GWHAAZE00000094exon26879252688394-
GWHAAZE00000094exon26885482688744-
GWHAAZE00000094CDS26885482688744-
GWHAAZE00000094CDS26879252688394-
GWHAAZE00000094CDS26871212687800-
Transcript Sequence

Network for GWHGAAZE033187

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04431.14Pec_lyase_N26841.30E-13
PF00544.20Pectate_lyase_41813615.30E-20
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName
GO:0030570molecular_functionpectate lyase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.788
SRR3591706second leaf0.000
SRR3591707mature leaf0.870
SRR3591708Shoot apex1.023
SRR3591709Stem10.657
SRR3591710White floral bud1463.620
SRR3591711White flower74.261
SRR3591712Green floral bud1628.491
SRR3591713Yellow flower47.679
SRP173429 SRR8316895Juvenile bud stage 355.176
SRR8316896Juvenile bud stage 929.990
SRR8316897Juvenile bud stage 348.426
SRR8316894Third green stage 283.460
SRR8316900Third green stage 1044.459
SRR8316901Third green stage 1149.150
SRR8316898Complete white stage 0.859
SRR8316899Complete white stage 7.278
SRR8316903Complete white stage 1.559
SRR8316902Silver flowering stage15.710
SRR8316904Silver flowering stage30.842
SRR8316905Silver flowering stage10.034
SRR8316906Gold flowering stage 3.847
SRR8316907Gold flowering stage 1.326
SRR8316908Gold flowering stage 2.095
SRP132670SRR6706286Control657.081
SRR6706287Light intensity 50%638.372
SRR6706288Light intensity 20%532.920
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11399.766
CNS0095593Slightly white alabastrum(diploid) 21152.170
CNS0095594Slightly white alabastrum(diploid) 31782.150
CNS0095595Whole white alabastrum(diploid) 22306.792
CNS0095596Whole white alabastrum(diploid) 32830.276
CNS0095597Whole white alabastrum(diploid) 42899.793
CNS0095598Silvery flower (diploied) 157.147
CNS0095599Silvery flower (diploied) 2226.326
CNS0095600Silvery flower (diploied) 348.220
CNS0095601Golden flower (diploid) 172.131
CNS0095602Golden flower (diploid) 241.977
CNS0095603Golden flower (diploid) 342.967
CNS0095604Slightly white alabastrum(tetraploid) 12514.617
CNS0095605Slightly white alabastrum(tetraploid) 23105.131
CNS0095606Slightly white alabastrum(tetraploid) 32.355
CNS0095607Whole white alabastrum(tetraploid) 14119.729
CNS0095608Whole white alabastrum(tetraploid) 24162.627
CNS0095609Whole white alabastrum(tetraploid) 31965.978
CNS0095610Silvery flower (tetraploid) 135.411
CNS0095611Silvery flower (tetraploid) 2157.170
CNS0095612Silvery flower (tetraploid) 3418.662
CNS0095613Golden flower (tetraploid) 158.623
CNS0095614Golden flower (tetraploid) 212.816
CNS0095615Golden flower (tetraploid) 3186.097
CRA001975CRR073297Stem 1471.497
CRR073298Stem 2454.426
CRR073299Stem 3254.896
CRR073300Leaf 11228.310
CRR073301Leaf 2901.918
CRR073302Leaf 3442.525
CRR073303Juvenile bud 1795.919
CRR073304Juvenile bud 2570.048
CRR073305Juvenile bud 372.924
CRR073306Third green 1320.435
CRR073307Third green 2331.036
CRR073308Third green 3320.735
CRR073309Second white 110.164
CRR073310Second white 277.383
CRR073311Second white 373.428
CRR073312Silver flowering 1329.361
CRR073313Silver flowering 2328.560
CRR073314Silver flowering 3186.783
CRR073315Gold flowering 1324.056
CRR073316Gold flowering 293.904
CRR073317Gold flowering 344.089
CRR073318Tawny withering 1342.478
CRR073319Tawny withering 2312.145
CRR073320Tawny withering 3289.857