Gene detail

Detail information of GWHGAAZE033179

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007032454.1	High mobility group isoform 1 [Theobroma cacao]
Swissprot	tr\|Q39601\|SSRP1_CATRO	FACT complex subunit SSRP1
trEMBL	tr\|A0A061EEG1\|A0A061EEG1_THECC	High mobility group isoform 1 {ECO:0000313\|EMBL:EOY03380.1}
TAIR10	AT3G28730.1	high mobility group

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2536914	2542400	+
GWHAAZE00000094	mRNA	2536914	2542400	+
GWHAAZE00000094	exon	2536914	2537126	+
GWHAAZE00000094	exon	2537370	2537475	+
GWHAAZE00000094	exon	2538039	2538175	+
GWHAAZE00000094	exon	2538403	2538486	+
GWHAAZE00000094	exon	2538570	2538664	+
GWHAAZE00000094	exon	2538767	2538875	+
GWHAAZE00000094	exon	2539010	2539096	+
GWHAAZE00000094	exon	2539203	2539295	+
GWHAAZE00000094	exon	2539482	2539679	+
GWHAAZE00000094	exon	2540471	2540616	+
GWHAAZE00000094	exon	2540699	2540846	+
GWHAAZE00000094	exon	2541147	2541245	+
GWHAAZE00000094	exon	2541345	2541527	+
GWHAAZE00000094	exon	2542093	2542171	+
GWHAAZE00000094	exon	2542273	2542400	+
GWHAAZE00000094	CDS	2536914	2537126	+
GWHAAZE00000094	CDS	2537370	2537475	+
GWHAAZE00000094	CDS	2538039	2538175	+
GWHAAZE00000094	CDS	2538403	2538486	+
GWHAAZE00000094	CDS	2538570	2538664	+
GWHAAZE00000094	CDS	2538767	2538875	+
GWHAAZE00000094	CDS	2539010	2539096	+
GWHAAZE00000094	CDS	2539203	2539295	+
GWHAAZE00000094	CDS	2539482	2539679	+
GWHAAZE00000094	CDS	2540471	2540616	+
GWHAAZE00000094	CDS	2540699	2540846	+
GWHAAZE00000094	CDS	2541147	2541245	+
GWHAAZE00000094	CDS	2541345	2541527	+
GWHAAZE00000094	CDS	2542093	2542171	+
GWHAAZE00000094	CDS	2542273	2542400	+

Transcript Sequence
>GWHTAAZE033218 GAATATTGTATTTGTTGGGAATTGCAGAATCCAGGGCAACTTAGGGTTCATGCAGGGGGTATATTATGGAAGAAACAAGGGGGAGGTAAGGCTGTGGAAGTGGATAAGGGTGATATCTTGGGCCTTACATGGATGAAGGTTCCGCGGACCAATCAGCTTGGAGTTCAGATTAAGGATGGTCTCAACTACAAATTCACGGGTTTTCGTGACCAGGATGTCACTAGCCTCACCAGTTTTTTCCAGAGCTCTTGTGGGTTAACGCCAGAAGAGAAACAACTTTCTGTTAGTGGGAAAAACTGGGGAGAAGTTGATTTAAATGGCAATATGCTTAAGTTTCTTGTTGGCTCCAAGCAAGCATTTGAGGTATCTTTGGCAGATGTCTCCCAAACTCAACTTCAAGGAAAAAATGATGTCATCTTGGAGTTCCATGTGGATGATACAACTGGAGCTAATGAGAAAGATTCATTGATGGAGTTAAGTTTTCACATACCTAATTCTAACACTCAATTTGTAGGTGATGAGAATCGTCCTCCGGCTCAGGTCTTTCGTGACAAAATCATGTCAATGGCAGATGTTGGTGCAGGAGGTGAAGAATCTGTTGTTACATTTGAGGGGATTGCAATTCTTACTCCAAGGGGCCGATACAATGTTGAACTTCATCTTTCATTTTTGCGGCTACAAGGGCAAGCCAATGATTTTAAAATTCAGTACAGCAGTGTTGTTCGTCTCTTTTTGCTGCCCAAGTCTAACCAACCGCATACCTTCGTTGTTGTTACTCTTGACCCACCAATCCGTAAAGGCCAAACACTATACCCACATATTGTCTTGCAGTTTGAAACAGATTTTGTCGTGGAAAGTAGTTTGTCACTAAATGAAGATCTTCTGAATACAAAGTACAAGGACAAGTTAGAACCATCGTACAAGGGTCTTATTCATGAAGTGTTCACGTTGATATTGCGTGGCCTATCTGGTGCCAAAGTCACTAGACCCGGAAAGTTTCGCAGCTGTCAGGACGGTTATGCCGTTAAATCGTCATTGAAAGCTGAAGATGGAGTCCTGTATCCACTTGAAAAGAGCTTTTTCTTTCTACCCAAACCTCCAACCCTTATTCTTCATGATGAGATCGACTATGTGGAATTTGAGAGGCATGCTCTTGGAGGGTCAAACATGCATTACTTCGATCTTCTTATTAGACTGAAGACTGAGCAAGAACATCAATTCCGGAACATTCAGAGAAATGAATACCACAATCTGTTCGACTTCATCAATTCGAAGGGTCTGAAAATCATGAACCTAGGAGGTGTCCAAGCTGCAGATGGTGTTGCTGCTGTTTTGCAGAGTGACGATGATGATGCTGTTGACCCACATCTTGAGCGGATTAAAAATGAAGCTGGTGGAGATGAGAGCGATGAGGAGGATGAAGATTTTGTTGCTGATAAGGATGATGGAGGTTCTCCTACCGATGACTCTGGGGAAGAAGAATCTGACGCTAGTGAAAGTGGAGGTGAAAAAGAGAAACCTGCCAAAAAGGAATCCAAGAAAGAACCTTCTGCTGCTAAAGCATCTTCTAGTAGGAAGAGACCCAAAGGTGGAGATGACGATGGTTCGAAGAAGAGGAAACCAAAGAAGAAGAAAGATCCAAATGCTCCAAAGAGGGCAATGTCTGGTTTCATGTTCTTTTCGCAAACTGAAAGAGAGAATGTTAAGAAGAGTCATCCTGGAATTGCATTTTCAGAAGTAGGGAAAGTTCTTGGAGAAAGATGGAATAAGATGACAGCTGAGGAGAAAGAACCATACGAAGCTAAGGCTCGAGCAGACAAAATACGATATAGGGATGAACTTAGCGGATACAAGAACGCACAACCTGCAAACGTTGGTTTAAGAAATGAATCAGATAGTCCTTAG

Network for GWHGAAZE033179

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17292.3	POB3_N	9	88	5.80E-19
PF03531.15	SSrecog	97	165	2.20E-24
PF08512.13	Rtt106	341	430	9.40E-22
PF00505.20	HMG_box	550	618	1.40E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HMG

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.089
	SRR3591706	second leaf	0.679
	SRR3591707	mature leaf	0.152
	SRR3591708	Shoot apex	3.422
	SRR3591709	Stem	1.416
	SRR3591710	White floral bud	1.684
	SRR3591711	White flower	1.150
	SRR3591712	Green floral bud	6.935
	SRR3591713	Yellow flower	0.632
SRP173429	SRR8316895	Juvenile bud stage	2.368
	SRR8316896	Juvenile bud stage	5.285
	SRR8316897	Juvenile bud stage	8.906
	SRR8316894	Third green stage	1.119
	SRR8316900	Third green stage	3.096
	SRR8316901	Third green stage	2.739
	SRR8316898	Complete white stage	0.078
	SRR8316899	Complete white stage	0.828
	SRR8316903	Complete white stage	0.266
	SRR8316902	Silver flowering stage	0.039
	SRR8316904	Silver flowering stage	0.072
	SRR8316905	Silver flowering stage	0.071
	SRR8316906	Gold flowering stage	0.112
	SRR8316907	Gold flowering stage	0.301
	SRR8316908	Gold flowering stage	0.593
SRP132670	SRR6706286	Control	1.558
	SRR6706287	Light intensity 50%	1.810
	SRR6706288	Light intensity 20%	1.704
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.678
	CNS0095593	Slightly white alabastrum(diploid) 2	2.908
	CNS0095594	Slightly white alabastrum(diploid) 3	6.107
	CNS0095595	Whole white alabastrum(diploid) 2	4.377
	CNS0095596	Whole white alabastrum(diploid) 3	5.258
	CNS0095597	Whole white alabastrum(diploid) 4	3.839
	CNS0095598	Silvery flower (diploied) 1	0.557
	CNS0095599	Silvery flower (diploied) 2	0.617
	CNS0095600	Silvery flower (diploied) 3	0.204
	CNS0095601	Golden flower (diploid) 1	0.066
	CNS0095602	Golden flower (diploid) 2	0.182
	CNS0095603	Golden flower (diploid) 3	0.238
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.737
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.840
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.154
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.591
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.122
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.261
	CNS0095610	Silvery flower (tetraploid) 1	0.689
	CNS0095611	Silvery flower (tetraploid) 2	0.704
	CNS0095612	Silvery flower (tetraploid) 3	1.498
	CNS0095613	Golden flower (tetraploid) 1	0.377
	CNS0095614	Golden flower (tetraploid) 2	0.532
	CNS0095615	Golden flower (tetraploid) 3	0.105
CRA001975	CRR073297	Stem 1	4.104
	CRR073298	Stem 2	3.433
	CRR073299	Stem 3	1.148
	CRR073300	Leaf 1	2.738
	CRR073301	Leaf 2	2.420
	CRR073302	Leaf 3	1.505
	CRR073303	Juvenile bud 1	1.720
	CRR073304	Juvenile bud 2	1.006
	CRR073305	Juvenile bud 3	1.076
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.210
	CRR073308	Third green 3	0.200
	CRR073309	Second white 1	0.083
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.028
	CRR073312	Silver flowering 1	0.088
	CRR073313	Silver flowering 2	0.028
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.039
	CRR073319	Tawny withering 2	0.946
	CRR073320	Tawny withering 3	0.534