Gene detail

Detail information of GWHGAAZE033172

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004237711.1	9.56972E-47	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	3E-15	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|M0ZS94\|M0ZS94_SOLTU	4E-48	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400006971}
TAIR10	AT3G06240.1	1E-14	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2440769	2442208	+
GWHAAZE00000094	mRNA	2440769	2442208	+
GWHAAZE00000094	exon	2440769	2442208	+
GWHAAZE00000094	CDS	2440769	2442208	+

Transcript Sequence
>GWHTAAZE033211 ATGGAGAGATGCCCTGAAGATTTGTTGATTGAAATTCTGTCGAGGCTGCCTGTGAAATCCCTAATATGTTGCAAGTGCGTATGCATGTACTGGTACACTCTTATTGAAAGCCCTATATTTGTTATTACACACTTCAACCACCCAAACAATCATCGTACGCGTCTCCTTGTTAATTATTACAAGGGTAAGGGTGGAGGCTCCGTTGATTCTGGTTTTATCTTGTGCCCCGAGGATTATGAAACTACTACTCTTGCCATCAATGAACGATTAAGCAAGCGCAAGCCTGTTCATGAAGATATTTATAATCCACTAGCACGCCCCAACGCATCTGCTCGTCCTTATGCTATTGCTGATGTACTTGGTCCTGTTAATGGCCTATTTCTGGTGCACTATTCCGCTAAGAGTCCTGAAACTTATAACGCGTTTTTGTGGAACCCTGCTACAAAAGAATTCTGGAACCTCCCTGCACCTACTTTCAACCTTCCACCCAATAATTACACCTACAACGACAGTGCATTCAATTTTGGATTTGGTTTGGACCCCTTCACCAATGACTACAAAGTGGTTTTGATCCTCTTTTACAAAAGTATAAATATTAAGCCTTCTGATCCTCGTCCTCCTCGTATTGCAGTTGTTTCAGTTTATTCCCTAGCAGCTAACTCTTGGAGACCAGTCGATAATGTATTGCCTTCAGTTAGTGGCATTTTTACTCCTCGTTGCTATATTGTCAGAGGGCGCAACTGTACATATCAGAACGGAGCTTATTACTGGATGTCAAGTGACCAAGGCGACAATAGTGTTGCAAGGATAGTTATGTTTGATATGGTCAAGGAGGTTTTTCGGGATATAGAACCACCACCATGTAATACCAAAAAATCTCCTTTGGTATTCTTTGATCTTATGTTGCGCAATGACTCTATTGCTTTCTTACTTTCCAAATATACAGCAACAGATAGGCCTTTCAAAGGAGCAGGTATATATGATGAGATGATTTTGGAATCAATTGAAGTATGGATAATGGAGGGAGAAGGGTATTATTGGACCAAACATTTAATTTATGGTCCCCATATACATGTCCGCCATCCCTTTGGGTTTTCTAGGAACGGCGATCTTCTCGTGGGAACTTGGGATTTTAGGCTGCTTTCGTACAACCCAATTACGCGCCAAATTAGAGATATTGGAACGGAGAGAAATATCTTTAAGGTTTTCAACTACAGGGAGACTATAGCTCCAATTATGCCCAGATCCAGGAAGTTACAGGAGGTTACCCCCGCACCTAGCTTTCTCCCCTTCACCTCTTCTAGCATGCTATCCACTAGCGCCGTTGTCCCCGTCCCTGCTCCACTCAGTTCATTGAATATTTTGGCACTAAAACTTGGGAAGTTTGCAAACATCGTGTTATATTATATAGGTTTGGCTTCTTTAAAAGAAGTTACATAG

Network for GWHGAAZE033172

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	3	43	6.40E-07
PF07734.14	FBA_1	252	315	0.00021

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	65.687
	SRR3591706	second leaf	36.651
	SRR3591707	mature leaf	43.929
	SRR3591708	Shoot apex	54.314
	SRR3591709	Stem	93.078
	SRR3591710	White floral bud	46.656
	SRR3591711	White flower	47.251
	SRR3591712	Green floral bud	50.928
	SRR3591713	Yellow flower	44.966
SRP173429	SRR8316895	Juvenile bud stage	132.910
	SRR8316896	Juvenile bud stage	165.260
	SRR8316897	Juvenile bud stage	54.394
	SRR8316894	Third green stage	59.075
	SRR8316900	Third green stage	154.778
	SRR8316901	Third green stage	156.734
	SRR8316898	Complete white stage	49.987
	SRR8316899	Complete white stage	181.163
	SRR8316903	Complete white stage	130.973
	SRR8316902	Silver flowering stage	68.586
	SRR8316904	Silver flowering stage	88.112
	SRR8316905	Silver flowering stage	37.900
	SRR8316906	Gold flowering stage	152.339
	SRR8316907	Gold flowering stage	152.954
	SRR8316908	Gold flowering stage	104.356
SRP132670	SRR6706286	Control	106.454
	SRR6706287	Light intensity 50%	110.450
	SRR6706288	Light intensity 20%	108.877
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	106.269
	CNS0095593	Slightly white alabastrum(diploid) 2	95.961
	CNS0095594	Slightly white alabastrum(diploid) 3	77.582
	CNS0095595	Whole white alabastrum(diploid) 2	80.724
	CNS0095596	Whole white alabastrum(diploid) 3	70.995
	CNS0095597	Whole white alabastrum(diploid) 4	71.884
	CNS0095598	Silvery flower (diploied) 1	77.954
	CNS0095599	Silvery flower (diploied) 2	111.397
	CNS0095600	Silvery flower (diploied) 3	117.634
	CNS0095601	Golden flower (diploid) 1	124.761
	CNS0095602	Golden flower (diploid) 2	120.684
	CNS0095603	Golden flower (diploid) 3	115.476
	CNS0095604	Slightly white alabastrum(tetraploid) 1	113.206
	CNS0095605	Slightly white alabastrum(tetraploid) 2	93.598
	CNS0095606	Slightly white alabastrum(tetraploid) 3	159.535
	CNS0095607	Whole white alabastrum(tetraploid) 1	69.588
	CNS0095608	Whole white alabastrum(tetraploid) 2	62.519
	CNS0095609	Whole white alabastrum(tetraploid) 3	108.031
	CNS0095610	Silvery flower (tetraploid) 1	154.630
	CNS0095611	Silvery flower (tetraploid) 2	116.150
	CNS0095612	Silvery flower (tetraploid) 3	128.999
	CNS0095613	Golden flower (tetraploid) 1	110.858
	CNS0095614	Golden flower (tetraploid) 2	128.661
	CNS0095615	Golden flower (tetraploid) 3	138.181
CRA001975	CRR073297	Stem 1	106.309
	CRR073298	Stem 2	86.786
	CRR073299	Stem 3	18.005
	CRR073300	Leaf 1	103.270
	CRR073301	Leaf 2	102.181
	CRR073302	Leaf 3	17.082
	CRR073303	Juvenile bud 1	26.528
	CRR073304	Juvenile bud 2	14.712
	CRR073305	Juvenile bud 3	39.951
	CRR073306	Third green 1	10.479
	CRR073307	Third green 2	6.526
	CRR073308	Third green 3	11.777
	CRR073309	Second white 1	15.053
	CRR073310	Second white 2	17.849
	CRR073311	Second white 3	18.783
	CRR073312	Silver flowering 1	14.958
	CRR073313	Silver flowering 2	10.207
	CRR073314	Silver flowering 3	17.105
	CRR073315	Gold flowering 1	5.647
	CRR073316	Gold flowering 2	14.185
	CRR073317	Gold flowering 3	5.236
	CRR073318	Tawny withering 1	30.875
	CRR073319	Tawny withering 2	43.829
	CRR073320	Tawny withering 3	32.889