Gene detail

Detail information of GWHGAAZE033158

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007031389.1	5.3793E-123	Peroxidase superfamily protein isoform 2, partial [Theobroma cacao]
COG	YP_007103018.1	0.00000002	peroxidase
Swissprot	tr\|Q9SGH6\|DOX1_ARATH	1E-107	Alpha-dioxygenase 1 (Precursor)
trEMBL	tr\|A0A061EBE8\|A0A061EBE8_THECC	2E-123	Peroxidase superfamily protein isoform 2 {ECO:0000313\|EMBL:EOY02315.1} (Fragment)
TAIR10	AT3G01420.1	2E-85	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2077136	2092054	+
GWHAAZE00000094	mRNA	2077136	2092054	+
GWHAAZE00000094	exon	2077136	2077288	+
GWHAAZE00000094	exon	2077377	2077522	+
GWHAAZE00000094	exon	2077744	2078019	+
GWHAAZE00000094	exon	2085214	2085416	+
GWHAAZE00000094	exon	2090560	2090638	+
GWHAAZE00000094	exon	2090923	2091125	+
GWHAAZE00000094	exon	2091774	2092054	+
GWHAAZE00000094	CDS	2077136	2077288	+
GWHAAZE00000094	CDS	2077377	2077522	+
GWHAAZE00000094	CDS	2077744	2078019	+
GWHAAZE00000094	CDS	2085214	2085416	+
GWHAAZE00000094	CDS	2090560	2090638	+
GWHAAZE00000094	CDS	2090923	2091125	+
GWHAAZE00000094	CDS	2091774	2092054	+

Transcript Sequence
>GWHTAAZE033197 ATGGGAAGCTTTAAAATATCAGACGACGGCCTTCTTCTTCATGAAGAAAACGGTATTGCCATATCCGGTGATATTCGCAATAGTTGGGCAGGCGTCTCGGTATTGCAGGCTCTCTTTATAAAAGAAAATAATGCAGTTTGTGAAGTCTTGAAGAAGGAATATCCTAAATTAGACGATGAACAATTGTACCGTCACGCAGCACTAGTGACGTCTGCTGTAATCGCAAAAATACATACAATTGATTGGACTGTTGAGCTTCTCAAAAATAACACATTATTTGCTGGAATGCAAGCCAACTGGTACGGATTGTTGGGGAAGAGATTTAAGGATATATTTGGGCATGTTGGTGGGCTCAGTTTGGGAGGCATTGTGGGTTTAAAGAAGACCGAGAATTATGGTGTACCATATTCGTTGACCGAGGAGTTTACCAGCGTTTATAGGATGCACTCGCTTCTACCCGATCACCTCCTTCTTAGGAACATCAATGCAGTACCGGGACCCAACAAATCTCCACCGTTGATTAAAGAGTATATTGTCTATCTCACTCCAAATTTTTCATTCTTTATGGGCCAACTGGTTGAAATGTCCAATCTGGTTGGACTTGAGGGAGAGAAGACCTTATCAGAAATTGGATTTAAAAGGATGATGGTTTCAATGGGCCACCAAGCAAGTGGGGCACTTGTGCTTTGGAACTATCCAGTGTGGCTCAGGGACATTATTCCACAAGATATGGACGGTGAAAATAGACCTGATCGAATTGACCTACTTGCTCTTGAACGACTCATGGCAGAGAAGAAGATCAAGGGTTTTGCAATAAGCGAGACTGCTTTTATTATATTTCTCTTGATGGCATCAAGGGTTGAAATATCAAATCTGGCTGGACCTGAGGGAGAGAAGACCTTATCAGAAATTGGATTTAAAAGGATGATGGTTTCAATGGGCCACCAAGCAAGCGGGGCGCTTGTGCTTTGGAATTATCCGGTGTGGCTTAGGGACATTATTCCACAAGATATCGACGGCAGAGATAGACCTGATCGAATTGACCTACCTGCCCTTGAAAAGGAGCTAATTCGTAGCGTGGATGATGTAGTTTTTCGGGACCGAGAGAGGAAAGTTGCCAGATACAATGACTTTCGTAGGTCCCTCCTATTGTTTCCTATCTCTAAATGGGATGATCTGACGGATGACAAGGAGGCTATCAAAATACTTGAAGAGGTGTACGGTGATGTGGAGGAGCTGGATTTGTTAGTGGGACTCATGGCAGAGAAGAAGATCAAGGGGTTTGCAATAAGTGAGACAGCTTTTCTTATATTTCTCTTAATGGCATCAAGGTACACATAA

Network for GWHGAAZE033158

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03098.16	An_peroxidase	19	258	8.50E-32
PF03098.16	An_peroxidase	300	444	2.00E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10529	DOX	alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.030
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.458
	SRR3591711	White flower	0.591
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.533
SRP173429	SRR8316895	Juvenile bud stage	0.032
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.917
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.027
	SRR8316898	Complete white stage	0.016
	SRR8316899	Complete white stage	0.018
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.275
	SRR8316904	Silver flowering stage	0.038
	SRR8316905	Silver flowering stage	0.174
	SRR8316906	Gold flowering stage	3.120
	SRR8316907	Gold flowering stage	0.222
	SRR8316908	Gold flowering stage	1.314
SRP132670	SRR6706286	Control	0.013
	SRR6706287	Light intensity 50%	0.009
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.087
	CNS0095593	Slightly white alabastrum(diploid) 2	0.015
	CNS0095594	Slightly white alabastrum(diploid) 3	0.031
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.019
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.117
	CNS0095599	Silvery flower (diploied) 2	0.023
	CNS0095600	Silvery flower (diploied) 3	0.014
	CNS0095601	Golden flower (diploid) 1	0.555
	CNS0095602	Golden flower (diploid) 2	0.106
	CNS0095603	Golden flower (diploid) 3	0.026
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.150
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.021
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.010
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.060
	CNS0095610	Silvery flower (tetraploid) 1	6.041
	CNS0095611	Silvery flower (tetraploid) 2	1.862
	CNS0095612	Silvery flower (tetraploid) 3	4.162
	CNS0095613	Golden flower (tetraploid) 1	5.925
	CNS0095614	Golden flower (tetraploid) 2	9.983
	CNS0095615	Golden flower (tetraploid) 3	3.303
CRA001975	CRR073297	Stem 1	0.008
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.014
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.094
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.038
	CRR073311	Second white 3	0.088
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.008
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.097
	CRR073316	Gold flowering 2	0.011
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.388
	CRR073319	Tawny withering 2	0.313
	CRR073320	Tawny withering 3	0.332