Gene detail

Detail information of GWHGAAZE033134

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010258333.1	PREDICTED: beta-1,3-galactosyltransferase 15-like isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q8L7F9\|B3GTF_ARATH	Beta-1,3-galactosyltransferase 15
trEMBL	tr\|D7SXC8\|D7SXC8_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22225.3}
TAIR10	AT1G26810.1	galactosyltransferase1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	1448557	1451864	-
GWHAAZE00000094	mRNA	1448557	1451864	-
GWHAAZE00000094	exon	1448557	1448792	-
GWHAAZE00000094	exon	1448920	1449027	-
GWHAAZE00000094	exon	1449352	1449531	-
GWHAAZE00000094	exon	1449607	1449735	-
GWHAAZE00000094	exon	1449840	1450121	-
GWHAAZE00000094	exon	1450225	1450448	-
GWHAAZE00000094	exon	1451060	1451864	-
GWHAAZE00000094	CDS	1451060	1451864	-
GWHAAZE00000094	CDS	1450225	1450448	-
GWHAAZE00000094	CDS	1449840	1450121	-
GWHAAZE00000094	CDS	1449607	1449735	-
GWHAAZE00000094	CDS	1449352	1449531	-
GWHAAZE00000094	CDS	1448920	1449027	-
GWHAAZE00000094	CDS	1448580	1448792	-
GWHAAZE00000094	three_prime_UTR	1448557	1448579	-

Transcript Sequence
>GWHTAAZE033173 ATGGAACCCAAGGTTGCTGAAGCGAAATTATTACCCAAAAAATTGAAAAACTTGTTTGGTGGTGCTTTGGTTGGATCCTTATTGGTGTTGTTAATTCTAAGGTATGGATTCATAGAAAATCACATCAGTGGAAGTCCGCTTTCTAGTCCTATCACCTCAAACACATCCAACGCTCTTAAATGGCTGCAAGGTGGGACCCTTCCCAACGTCCAAACTCCACAACAGTCAGATCGTGTGGTTTCCACTGATATATTAGTTTCTAGTCTCTTTCGTCAAAGAAACTTCTCTAAAGAAGTGCAAACTTCTCTACGAACATGGAACTACATGAAGAACATAATTGATTATACGCAAAGTCTACCTAATGCAGTTGAGGCTATAAGGGAAGCCGTGTTTGCTTGGGATAATCTTGTAAATTCAACAGAAAAGGAAGAAAATTTTGGCACGAATAATAGTGTAGTTCTTAAGGGGAAGGAGAAACAGTGTCCTTACTTTCTAAATAAGATGAATTCCACTGAATTTGGTGAGAAAGGCTATAGGTTACGAATCCCATGTGGACTGATTCAAGGTTCGTCTGTAACTGTCATTGGCATTCCTAATGGGCTTCTTGGTAATTTTCAAATTGATTTAACGGGAGAATCGATACCTGGGGAGCCGAATCCGCCAATAGTTCTGCATTACAATGTACGGCTCAGTGGTGATAAGGTAACTGAGGACCCTGTAATTGTCCAAAACACGTGGAGTGTTGCTGGTGGTTGGGCTGCAGAGGAGCGTTGCCCGTCAATGGTTCCTGACAATACTAAGAAAGTAGATGAGTTAAACCAATGCAATCCAAGGATTGGTCAAGATGATACTGAGAAGAGGTCTTCAAATTTTTCGATATGGTCATCAATGGGGCGTAACAGATCTAAACCTAGACGGTTTTTTCCCTTCAAGAAAGGGTACCTCTCCGTTATGACACTTAGGGCTGGAGAAGAAGGGGTCCATATGACAGTTGATGGAAGACACGCAACTTCCTTTGCTTTTCGCGAAAGGTTGGAACCTTGGTTAGTTAGCGAAGTCCGGATTTCTGGGGACCTAGAGTTAATTTCTGTAATGGCGAGTGGTTTACCTACATCTAGTGATCTAAATGATGCTGTTGAATTAGAGACACTGAAATCAGTTCCATTGGCACTTCACAAGCCTTTGGATCTTTTTATTGGCGTCTTTTCTACCGCAAACAATTTCAAGCGTAGGATGTCTGTTCGAAGAACATGGATGCAGTACTCTGCAGTAAAGGATGGAGTAGTTGCAGTTCGCTTTTTTGTTGGCCTGCATAAGAACCAGATGGTGAATGAGGAACTTTGGAATGAGGTACAGACTTATGGAGACATTCAGCTGATGCCTTTCATCGATTATTATACCCTTATAACCTGGAAAACTGTGGCAATCTGCACTTTTGGGACACAAGTTGTTTCTGCAAAGTATATAATGAAAACAGACGATGACTCATTTGTTCGAGTGGATGAAGTGATTAAATCACTAAATCAGGCAAATGTGAGGAATGGGTTGTTGTATGGTCTCATCAATTCCAATGCTCGGCCTCACCGGAATCCTGACAGCAAATGGTATATCAGCCCTGAGGAGTGGCAAGAAGATACTTACCCGCCTTGGGCGCACGGCCCGGGCTACGTTGTCTCACAAGACATAGCGAAACTGATCCATGAAAGACACAAGAAAGGTCATCTAAAGATGTTCAAGCTGGAGGACGTGGCAATGGGGGTGTGGATAGCAGATTTGAAGAAGGGAGGCTTGGAAGTTAGTTATATAAATGAACAGCGGATTTATAATGAAGGTTGCAAGGATGGATATGTTGTTGCTCACTACCAAAGCCCCAAAGAAATGCTATGCCTATGGCAAAAGTTGCAAGAAGAGAAGAATGATAAGTGCTGTCGAGACCGGTAAATAAAACGATTTACAATGTGAAG

Network for GWHGAAZE033134

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00337.23	Gal-bind_lectin	179	365	8.80E-34
PF01762.22	Galactosyl_T	409	593	3.00E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14413	GALT1	Metabolic pathways	map01100
K14413	GALT1	Various types of N-glycan biosynthesis	map00513

Gene Ontology

GO term	Ontology	Name
GO:0006486	biological_process	protein glycosylation
GO:0016020	cellular_component	membrane
GO:0030246	molecular_function	carbohydrate binding
GO:0008378	molecular_function	galactosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.063
	SRR3591706	second leaf	3.122
	SRR3591707	mature leaf	4.187
	SRR3591708	Shoot apex	2.067
	SRR3591709	Stem	13.101
	SRR3591710	White floral bud	2.123
	SRR3591711	White flower	3.039
	SRR3591712	Green floral bud	1.938
	SRR3591713	Yellow flower	2.964
SRP173429	SRR8316895	Juvenile bud stage	1.083
	SRR8316896	Juvenile bud stage	2.219
	SRR8316897	Juvenile bud stage	1.515
	SRR8316894	Third green stage	0.920
	SRR8316900	Third green stage	1.060
	SRR8316901	Third green stage	1.228
	SRR8316898	Complete white stage	0.365
	SRR8316899	Complete white stage	2.005
	SRR8316903	Complete white stage	0.441
	SRR8316902	Silver flowering stage	0.773
	SRR8316904	Silver flowering stage	0.786
	SRR8316905	Silver flowering stage	0.332
	SRR8316906	Gold flowering stage	2.412
	SRR8316907	Gold flowering stage	1.633
	SRR8316908	Gold flowering stage	6.998
SRP132670	SRR6706286	Control	1.267
	SRR6706287	Light intensity 50%	1.499
	SRR6706288	Light intensity 20%	1.105
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.665
	CNS0095593	Slightly white alabastrum(diploid) 2	2.544
	CNS0095594	Slightly white alabastrum(diploid) 3	2.939
	CNS0095595	Whole white alabastrum(diploid) 2	2.265
	CNS0095596	Whole white alabastrum(diploid) 3	0.724
	CNS0095597	Whole white alabastrum(diploid) 4	1.758
	CNS0095598	Silvery flower (diploied) 1	5.566
	CNS0095599	Silvery flower (diploied) 2	2.704
	CNS0095600	Silvery flower (diploied) 3	1.626
	CNS0095601	Golden flower (diploid) 1	3.946
	CNS0095602	Golden flower (diploid) 2	3.043
	CNS0095603	Golden flower (diploid) 3	3.066
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.829
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.076
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.661
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.684
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.359
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.822
	CNS0095610	Silvery flower (tetraploid) 1	0.674
	CNS0095611	Silvery flower (tetraploid) 2	0.507
	CNS0095612	Silvery flower (tetraploid) 3	2.083
	CNS0095613	Golden flower (tetraploid) 1	1.565
	CNS0095614	Golden flower (tetraploid) 2	2.283
	CNS0095615	Golden flower (tetraploid) 3	1.513
CRA001975	CRR073297	Stem 1	1.713
	CRR073298	Stem 2	1.143
	CRR073299	Stem 3	0.560
	CRR073300	Leaf 1	0.599
	CRR073301	Leaf 2	1.166
	CRR073302	Leaf 3	0.746
	CRR073303	Juvenile bud 1	0.201
	CRR073304	Juvenile bud 2	0.256
	CRR073305	Juvenile bud 3	0.348
	CRR073306	Third green 1	0.096
	CRR073307	Third green 2	0.202
	CRR073308	Third green 3	0.517
	CRR073309	Second white 1	0.074
	CRR073310	Second white 2	0.599
	CRR073311	Second white 3	0.092
	CRR073312	Silver flowering 1	2.727
	CRR073313	Silver flowering 2	1.906
	CRR073314	Silver flowering 3	3.513
	CRR073315	Gold flowering 1	1.028
	CRR073316	Gold flowering 2	0.513
	CRR073317	Gold flowering 3	0.521
	CRR073318	Tawny withering 1	7.617
	CRR073319	Tawny withering 2	10.245
	CRR073320	Tawny withering 3	6.769