Gene detail

Detail information of GWHGAAZE033099

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009365953.1	0	PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like [Pyrus x bretschneideri]
COG	YP_001736620.1	0.0000002	protein-tyrosine phosphatase
trEMBL	tr\|A0A061EG00\|A0A061EG00_THECC	0	Calcium/lipid-binding (CaLB) phosphatase {ECO:0000313\|EMBL:EOY03578.1}
TAIR10	AT5G39400.1	5E-149	Calcium/lipid-binding (CaLB) phosphatase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	756550	759432	+
GWHAAZE00000094	mRNA	756550	759432	+
GWHAAZE00000094	exon	756550	756837	+
GWHAAZE00000094	exon	756954	757130	+
GWHAAZE00000094	exon	757507	757620	+
GWHAAZE00000094	exon	758130	758342	+
GWHAAZE00000094	exon	758456	758740	+
GWHAAZE00000094	exon	758895	758996	+
GWHAAZE00000094	exon	759286	759432	+
GWHAAZE00000094	CDS	756550	756837	+
GWHAAZE00000094	CDS	756954	757130	+
GWHAAZE00000094	CDS	757507	757620	+
GWHAAZE00000094	CDS	758130	758342	+
GWHAAZE00000094	CDS	758456	758740	+
GWHAAZE00000094	CDS	758895	758996	+
GWHAAZE00000094	CDS	759286	759432	+

Transcript Sequence
>GWHTAAZE033138 ATGGGGTTCAAATTATCAAAACAGGGGTTAGGGAAGGTTGAAAACGAGGGTATATTCCAAGTACAGCGTCAACTAATCTCTTATTTAACCGGAAGTTTTTATATACGTAACTTAGTATCCAAAAAAAGGAGGCGAATGCTAGTTGAGGGTTATGATCTCGATATGTCGTATATTACGGATCGTGTATTGGCAATGTCGTTCCCTGCAGAACGTATGAGAGCCATGTATCGCAATCCTCTCTGGCAGGTCCAGTCTGTGCTGGACATGAGACATCCAGGGCACTACAAGGTCTATAATTTATGTGTAGAACAAGCTTATGACCCATCACATTTTCATGGCCGTGTAGAGAGATTTCCATTTGACGACAATCATGTGCCACCTCTGCAAATGATCAAGGCTTTTTGTGAAAGTGTGGACGCATGGCTTTCAAGTGACCCAAAGAACATTGTAGTTGTACACTGCATGGCAGGCAAAGGTCGGACGGGTTTGATGGTGTCTTCATACCTGGTTTACAGTGGCATGCTAGCTGAGGAGGCTCTTCAGGTGTATGCAACTAAACGGACCACCAATAATGAAGGAGTGTCGATACCAAGCCAACGTCGTTATGTCGGCTACTGGGAGAAAGTACTTTCTTTTCCTAGAGGAGTTAATCGTGGCTCTCCAGAAGTGAACTTACCTCAACCATGTAGCAGAGAACTGCGGCGAGTTCGACTTTATGACACTGCTAACATTGAATCTGTTTTCTTTGTTGTCACTGAGTTGCAAGAGGTAAGGCTTCACCACATCACTCAGGTCATCTTCTTGACTTCTTTAGCGATATACACAATTTATTTCGGACAGGTAACTGGTCAGCAGTATTGGCCACCTTCAGAAGTTTCGAGGAGTTGCTGCAGACGAATTAAGAAGGGATCTGAAAGACCAAATAGCCCTCGGTATTATTATTCCTTTGTTGAGAGAGATGAAGAAGAAATGGAACTAGAAGTTGAGGAACCTCACGTAGTTGTCCAAATGGACACTGAGAGTTCTGTACTTTACCAGAAAACCTGCCTTGACTACTATTACGAAAAGCCATTACAAGTTACTGGAGATGTGCGTGTGATTTTCTACGAAAAGCTATTTGGAGGGCGACTTTTCTATGCTTGCTTCAATACAGCTTTCGTTAGGAACAGCATGCTACAGTTTTCTGTGAGGGATTTGGATAAAGTTGGGAAAAAGGGGAGGTCAATATGTGGTCCAGCATTCTGCTTAGAGTTGCTTTTTGGTCCTTCTAATGCTAACTCCTGCCATTCGGCTCGATCTGATGATAGTGATGTTAGCGATGCTTAG

Network for GWHGAAZE033099

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00782.21	DSPc	123	188	4.30E-05
PF10409.10	PTEN_C2	332	420	2.70E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01110	PTEN	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		FoxO signaling pathway	map04068
		Phosphatidylinositol signaling system	map04070
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		p53 signaling pathway	map04115
		Cellular senescence	map04218
		Focal adhesion	map04510
		Axon regeneration	map04361
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0016311	biological_process	dephosphorylation
GO:0008138	molecular_function	protein tyrosine/serine/threonine phosphatase activity
GO:0004725	molecular_function	protein tyrosine phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.465
	SRR3591706	second leaf	1.180
	SRR3591707	mature leaf	1.351
	SRR3591708	Shoot apex	2.184
	SRR3591709	Stem	1.143
	SRR3591710	White floral bud	68.331
	SRR3591711	White flower	5.907
	SRR3591712	Green floral bud	25.596
	SRR3591713	Yellow flower	6.379
SRP173429	SRR8316895	Juvenile bud stage	1.562
	SRR8316896	Juvenile bud stage	2.578
	SRR8316897	Juvenile bud stage	0.834
	SRR8316894	Third green stage	1.419
	SRR8316900	Third green stage	11.380
	SRR8316901	Third green stage	6.762
	SRR8316898	Complete white stage	1.314
	SRR8316899	Complete white stage	3.624
	SRR8316903	Complete white stage	1.626
	SRR8316902	Silver flowering stage	1.480
	SRR8316904	Silver flowering stage	2.526
	SRR8316905	Silver flowering stage	0.733
	SRR8316906	Gold flowering stage	1.810
	SRR8316907	Gold flowering stage	2.483
	SRR8316908	Gold flowering stage	2.103
SRP132670	SRR6706286	Control	7.279
	SRR6706287	Light intensity 50%	9.136
	SRR6706288	Light intensity 20%	8.047
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.500
	CNS0095593	Slightly white alabastrum(diploid) 2	3.257
	CNS0095594	Slightly white alabastrum(diploid) 3	2.692
	CNS0095595	Whole white alabastrum(diploid) 2	23.922
	CNS0095596	Whole white alabastrum(diploid) 3	27.245
	CNS0095597	Whole white alabastrum(diploid) 4	47.421
	CNS0095598	Silvery flower (diploied) 1	4.140
	CNS0095599	Silvery flower (diploied) 2	9.042
	CNS0095600	Silvery flower (diploied) 3	4.208
	CNS0095601	Golden flower (diploid) 1	3.962
	CNS0095602	Golden flower (diploid) 2	3.727
	CNS0095603	Golden flower (diploid) 3	3.806
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.120
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.992
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.853
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.377
	CNS0095608	Whole white alabastrum(tetraploid) 2	52.687
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.118
	CNS0095610	Silvery flower (tetraploid) 1	3.113
	CNS0095611	Silvery flower (tetraploid) 2	7.658
	CNS0095612	Silvery flower (tetraploid) 3	23.507
	CNS0095613	Golden flower (tetraploid) 1	2.892
	CNS0095614	Golden flower (tetraploid) 2	2.419
	CNS0095615	Golden flower (tetraploid) 3	9.528
CRA001975	CRR073297	Stem 1	5.235
	CRR073298	Stem 2	3.402
	CRR073299	Stem 3	1.469
	CRR073300	Leaf 1	14.362
	CRR073301	Leaf 2	6.898
	CRR073302	Leaf 3	4.333
	CRR073303	Juvenile bud 1	23.606
	CRR073304	Juvenile bud 2	19.228
	CRR073305	Juvenile bud 3	3.208
	CRR073306	Third green 1	11.762
	CRR073307	Third green 2	14.446
	CRR073308	Third green 3	10.996
	CRR073309	Second white 1	2.453
	CRR073310	Second white 2	3.729
	CRR073311	Second white 3	3.058
	CRR073312	Silver flowering 1	16.118
	CRR073313	Silver flowering 2	15.583
	CRR073314	Silver flowering 3	8.108
	CRR073315	Gold flowering 1	14.813
	CRR073316	Gold flowering 2	4.464
	CRR073317	Gold flowering 3	6.458
	CRR073318	Tawny withering 1	13.361
	CRR073319	Tawny withering 2	8.242
	CRR073320	Tawny withering 3	11.136