Gene detail

Detail information of GWHGAAZE032967

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008387843.1	2.8073E-78	PREDICTED: uncharacterized protein LOC103450281 isoform X6 [Malus domestica]
trEMBL	tr\|D7SLG2\|D7SLG2_VITVI	1E-54	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16490.3}
TAIR10	AT1G11880.1	2E-45	transferases, transferring hexosyl groups

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000077	gene	35982	43816	+
GWHAAZE00000077	mRNA	35982	43816	+
GWHAAZE00000077	exon	35982	36345	+
GWHAAZE00000077	exon	42110	42287	+
GWHAAZE00000077	exon	43603	43816	+
GWHAAZE00000077	CDS	35982	36345	+
GWHAAZE00000077	CDS	42110	42287	+
GWHAAZE00000077	CDS	43603	43816	+

Transcript Sequence
>GWHTAAZE033006 ATGACGAGGAGCATTCAAAATTCAATTGAAAAAAATCACACTCGCCTCAATTTCCGATCAGCAATTGCATCAAGACTCCTTGTCATAGCACTAATCATACTCTGGAGGAATCTCCTCAGCCCCTACGACACCTCTGCATCATTAAACGCTAATAATTGCATTTCTTCTTCCTCCTCCAACAATGGCAGCAGCAGCCATGGCATTAACATTCGCTTCCCTCGCATCGCTTCGGCTATTGAAGAGAGCATCGTGTGGGATGGCGTTTACTTCGTCCGAATCGCGGAATGCGGGGGTTACGAATACGAGCAGTCCTACGCCTTCTTGCCTCTTCTCCCTATCTCCATTTCTTTCCTCTCCACAACAGTTGGCAGTGCAGGTTCTTATCGTGGAGCTTTGCGTTCTATTTGTGTTTTTGTTCCATTTATTGCTTTTCAAGCATATGGCTACTATAATATTTGTCTTGGGCGTTCCGTGGAGGAAACTAGGCCATGGTGCAAGGCAAGAATTCCTTTGCTGTACAATTTTATTCGGAGTCATTATTGGGGAGTAGGGTTTTTAAGATATTTCCAGCTAAAACAGCTGCCAAATTTCCTACTTGCTTTCCCAATATTGTCACTAGCTGTTTGTTCAATCATCTACTATGCTAAGCTACGAAGAGAGGTTTTTCTCTCACTTGGTTTCCGAGCTTCTCCTGTGGATAAGAAGTCTGCTGCTGTGTTCTTTTCTGTTGGGGACAGAGTCAAGATCAAAAAGTGA

Network for GWHGAAZE032967

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04188.14	Mannosyl_trans2	19	122	1.80E-18
PF04188.14	Mannosyl_trans2	131	238	6.90E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07542	PIGV	Metabolic pathways	map01100
K07542	PIGV	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	biological_process	GPI anchor biosynthetic process
GO:0004584	molecular_function	obsolete dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.462
	SRR3591706	second leaf	1.791
	SRR3591707	mature leaf	2.143
	SRR3591708	Shoot apex	1.821
	SRR3591709	Stem	2.933
	SRR3591710	White floral bud	1.729
	SRR3591711	White flower	1.219
	SRR3591712	Green floral bud	1.648
	SRR3591713	Yellow flower	1.422
SRP173429	SRR8316895	Juvenile bud stage	0.297
	SRR8316896	Juvenile bud stage	1.444
	SRR8316897	Juvenile bud stage	0.873
	SRR8316894	Third green stage	0.839
	SRR8316900	Third green stage	0.902
	SRR8316901	Third green stage	1.011
	SRR8316898	Complete white stage	0.564
	SRR8316899	Complete white stage	2.324
	SRR8316903	Complete white stage	1.066
	SRR8316902	Silver flowering stage	0.363
	SRR8316904	Silver flowering stage	1.048
	SRR8316905	Silver flowering stage	0.464
	SRR8316906	Gold flowering stage	1.332
	SRR8316907	Gold flowering stage	1.642
	SRR8316908	Gold flowering stage	0.829
SRP132670	SRR6706286	Control	0.759
	SRR6706287	Light intensity 50%	1.189
	SRR6706288	Light intensity 20%	1.406
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.787
	CNS0095593	Slightly white alabastrum(diploid) 2	0.519
	CNS0095594	Slightly white alabastrum(diploid) 3	0.586
	CNS0095595	Whole white alabastrum(diploid) 2	1.054
	CNS0095596	Whole white alabastrum(diploid) 3	0.869
	CNS0095597	Whole white alabastrum(diploid) 4	0.722
	CNS0095598	Silvery flower (diploied) 1	0.462
	CNS0095599	Silvery flower (diploied) 2	0.675
	CNS0095600	Silvery flower (diploied) 3	1.108
	CNS0095601	Golden flower (diploid) 1	0.354
	CNS0095602	Golden flower (diploid) 2	1.347
	CNS0095603	Golden flower (diploid) 3	0.913
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.908
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.219
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.399
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.042
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.336
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.821
	CNS0095610	Silvery flower (tetraploid) 1	0.829
	CNS0095611	Silvery flower (tetraploid) 2	1.605
	CNS0095612	Silvery flower (tetraploid) 3	0.407
	CNS0095613	Golden flower (tetraploid) 1	0.405
	CNS0095614	Golden flower (tetraploid) 2	0.492
	CNS0095615	Golden flower (tetraploid) 3	0.530
CRA001975	CRR073297	Stem 1	0.655
	CRR073298	Stem 2	0.561
	CRR073299	Stem 3	0.007
	CRR073300	Leaf 1	0.545
	CRR073301	Leaf 2	0.551
	CRR073302	Leaf 3	0.237
	CRR073303	Juvenile bud 1	0.365
	CRR073304	Juvenile bud 2	0.037
	CRR073305	Juvenile bud 3	0.476
	CRR073306	Third green 1	0.200
	CRR073307	Third green 2	0.039
	CRR073308	Third green 3	0.142
	CRR073309	Second white 1	0.067
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.102
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.471
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.671
	CRR073319	Tawny withering 2	0.193
	CRR073320	Tawny withering 3	0.004