Gene detail

Detail information of GWHGAAZE032953

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDY00843.1	0	BnaCnng00430D [Brassica napus]
COG	YP_007160414.1	8E-140	glucose-1-phosphate adenylyltransferase
Swissprot	tr\|Q9M462\|GLGS_BRANA	0	Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic (Precursor)
trEMBL	tr\|Q9M4W7\|Q9M4W7_PERFR	0	Glucose-1-phosphate adenylyltransferase {ECO:0000256\|RuleBase:RU003565}
TAIR10	AT5G48300.1	2E-171	ADP glucose pyrophosphorylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000073	gene	17454	22116	+
GWHAAZE00000073	mRNA	17454	22116	+
GWHAAZE00000073	exon	17454	17801	+
GWHAAZE00000073	exon	20019	20315	+
GWHAAZE00000073	exon	20581	20850	+
GWHAAZE00000073	exon	20969	21148	+
GWHAAZE00000073	exon	22009	22116	+
GWHAAZE00000073	CDS	17454	17801	+
GWHAAZE00000073	CDS	20019	20315	+
GWHAAZE00000073	CDS	20581	20850	+
GWHAAZE00000073	CDS	20969	21148	+
GWHAAZE00000073	CDS	22009	22116	+

Transcript Sequence
>GWHTAAZE032992 ATGGCAGCGATCGGATTGTTGAAGGCACCTCACACTTACACTTCTTCTTCCACCATTAGCAATAATGAGAGAAGATATTTCCGTGCATCGCTGTTCTTAACACGTATAAACGGCTCGTCTCGCCGAGACCTTCTCTTGAATTCTCGAAACTTCTGTCGCTCCATCCCCGCAAAAAGCCTGTCCTTCTCGTCCTCTCAACTCGTCGGAGACAAGATCAAACCGACGTCGTCCGTACAGAGACGCCGTGCCGGAGCTCATTCCGATGGCAGGAATTCGCTTATCGTTTCTCCAAAGGCCGTTTCTGATTCAATGAATTCGCAGACATGTCTTGATCCTGACGCTAGCCGAAGCGTTCTCGGAATTATACTTGGAGGTGGAGCTGGGACCCGCCTTTACCCTCTAACAAAGAAGAGGGCAAAACCAGCCGTTCCCCTGGGAGCAAATTATAGGCTTATTGATATCCCAGTCAGCAACTGCTTGAACAGCAACGTGTCAAAGATTTATGTTCTTACTCAATTTAACTCTGCATCGCTCAATCGTCACCTTTCACGGGCTTACGCAAGTAACATGGGCAGTTACAAGAATGAAGGATTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCAGAGAACCCGAATTGGTTCCAGGGTACTGCTGATGCTGTGAGGCAGTATCTGTGGCTGTTTGAGGAGCACAATGTTCTAGAATTTCTGGTCCTTGCTGGAGACCATTTGTACCGTATGGACTATGAGAAGTTTATTCAAGCACACAGAGAAACTGATGCTGACATCACTGTAGCTGCCCTGCCAATGGATGAAAAGCGTGCCACTGCATTTGGTCTGATGAAGATTGATGAAGAAGGACGCATAGTAGAATTTGCAGAGAAACCCAAAGGAGCGGAATTGAAAGCTATGAAGGTTGATACTACAATTTTAGGTCTTGATGATGAGAGAGCTAAAGAGATGCCTTACATTGCGAGTATGGGTATTTATGTAGTCAGCAAAGATGTTATGATAAATCTACTCAGAGATCAGTTTCCAGGAGCAAATGATTTCGGAAGTGAAGTAATACCTGGGGCAACGAACATTGGATTAAGAGTGCAAGCATACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAAGCTTTTTATAATGCCAATTTGGGGATCACAAAGAAACCGATTCCTGATTTCAGGTAA

Network for GWHGAAZE032953

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00483.24	NTP_transferase	120	393	7.90E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00975	glgC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520
		Biofilm formation - Escherichia coli	map02026

Gene Ontology

GO term	Ontology	Name
GO:0005978	biological_process	glycogen biosynthetic process
GO:0009058	biological_process	biosynthetic process
GO:0008878	molecular_function	glucose-1-phosphate adenylyltransferase activity
GO:0016779	molecular_function	nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.581
	SRR3591706	second leaf	64.355
	SRR3591707	mature leaf	68.007
	SRR3591708	Shoot apex	27.271
	SRR3591709	Stem	69.354
	SRR3591710	White floral bud	13.691
	SRR3591711	White flower	8.371
	SRR3591712	Green floral bud	15.919
	SRR3591713	Yellow flower	3.546
SRP173429	SRR8316895	Juvenile bud stage	12.911
	SRR8316896	Juvenile bud stage	17.787
	SRR8316897	Juvenile bud stage	10.217
	SRR8316894	Third green stage	8.763
	SRR8316900	Third green stage	14.967
	SRR8316901	Third green stage	15.369
	SRR8316898	Complete white stage	2.967
	SRR8316899	Complete white stage	18.725
	SRR8316903	Complete white stage	5.998
	SRR8316902	Silver flowering stage	3.487
	SRR8316904	Silver flowering stage	4.893
	SRR8316905	Silver flowering stage	2.240
	SRR8316906	Gold flowering stage	6.694
	SRR8316907	Gold flowering stage	6.304
	SRR8316908	Gold flowering stage	14.164
SRP132670	SRR6706286	Control	15.977
	SRR6706287	Light intensity 50%	16.190
	SRR6706288	Light intensity 20%	18.857
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.582
	CNS0095593	Slightly white alabastrum(diploid) 2	7.123
	CNS0095594	Slightly white alabastrum(diploid) 3	9.561
	CNS0095595	Whole white alabastrum(diploid) 2	11.170
	CNS0095596	Whole white alabastrum(diploid) 3	7.079
	CNS0095597	Whole white alabastrum(diploid) 4	8.360
	CNS0095598	Silvery flower (diploied) 1	20.199
	CNS0095599	Silvery flower (diploied) 2	32.336
	CNS0095600	Silvery flower (diploied) 3	8.557
	CNS0095601	Golden flower (diploid) 1	20.097
	CNS0095602	Golden flower (diploid) 2	14.181
	CNS0095603	Golden flower (diploid) 3	14.017
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.092
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.032
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.689
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.172
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.877
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.470
	CNS0095610	Silvery flower (tetraploid) 1	4.123
	CNS0095611	Silvery flower (tetraploid) 2	5.547
	CNS0095612	Silvery flower (tetraploid) 3	3.296
	CNS0095613	Golden flower (tetraploid) 1	3.168
	CNS0095614	Golden flower (tetraploid) 2	4.143
	CNS0095615	Golden flower (tetraploid) 3	1.308
CRA001975	CRR073297	Stem 1	14.920
	CRR073298	Stem 2	16.004
	CRR073299	Stem 3	17.035
	CRR073300	Leaf 1	7.995
	CRR073301	Leaf 2	8.755
	CRR073302	Leaf 3	10.832
	CRR073303	Juvenile bud 1	9.942
	CRR073304	Juvenile bud 2	10.906
	CRR073305	Juvenile bud 3	9.082
	CRR073306	Third green 1	3.390
	CRR073307	Third green 2	2.468
	CRR073308	Third green 3	2.010
	CRR073309	Second white 1	5.391
	CRR073310	Second white 2	4.724
	CRR073311	Second white 3	3.555
	CRR073312	Silver flowering 1	4.602
	CRR073313	Silver flowering 2	6.207
	CRR073314	Silver flowering 3	3.461
	CRR073315	Gold flowering 1	14.713
	CRR073316	Gold flowering 2	17.254
	CRR073317	Gold flowering 3	16.786
	CRR073318	Tawny withering 1	9.360
	CRR073319	Tawny withering 2	7.059
	CRR073320	Tawny withering 3	9.350