Detail information of GWHGAAZE032882


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrQ96471.1DCAM_IPONI0RecName: Full=S-adenosylmethionine decarboxylase proenzyme; Short=AdoMetDC; Short=SAMDC; Contains: RecName: Full=S-adenosylmethionine decarboxylase alpha chain; Contains: RecName: Full=S-adenosylmethionine decarboxylase beta chain; Flags: Precursor [Ipomoea nil]
Swissprottr|Q96471|DCAM_IPONI0S-adenosylmethionine decarboxylase beta chain (Precursor)
trEMBLtr|Q7FYG9|Q7FYG9_IPOBA0S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|PIRNR:PIRNR001355}
TAIR10AT5G15950.22E-138Adenosylmethionine decarboxylase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000056gene145321146403-
GWHAAZE00000056mRNA145321146403-
GWHAAZE00000056exon145321146403-
GWHAAZE00000056CDS145321146403-
Transcript Sequence

Network for GWHGAAZE032882

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01536.17SAM_decarbox93321.30E-108
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01611speD, AMD1 Metabolic pathways map01100
Cysteine and methionine metabolismmap00270
Arginine and proline metabolismmap00330

Gene Ontology

GO term OntologyName
GO:0006597biological_processspermine biosynthetic process
GO:0008295biological_processspermidine biosynthetic process
GO:0004014molecular_functionadenosylmethionine decarboxylase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf134.361
SRR3591706second leaf112.061
SRR3591707mature leaf309.575
SRR3591708Shoot apex76.209
SRR3591709Stem215.229
SRR3591710White floral bud558.889
SRR3591711White flower527.562
SRR3591712Green floral bud354.688
SRR3591713Yellow flower457.950
SRP173429 SRR8316895Juvenile bud stage 259.574
SRR8316896Juvenile bud stage 397.614
SRR8316897Juvenile bud stage 125.692
SRR8316894Third green stage 170.683
SRR8316900Third green stage 596.095
SRR8316901Third green stage 653.382
SRR8316898Complete white stage 586.482
SRR8316899Complete white stage 922.624
SRR8316903Complete white stage 810.702
SRR8316902Silver flowering stage650.768
SRR8316904Silver flowering stage888.688
SRR8316905Silver flowering stage393.398
SRR8316906Gold flowering stage 964.863
SRR8316907Gold flowering stage 1005.341
SRR8316908Gold flowering stage 679.911
SRP132670SRR6706286Control263.674
SRR6706287Light intensity 50%289.724
SRR6706288Light intensity 20%288.169
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1357.592
CNS0095593Slightly white alabastrum(diploid) 2379.570
CNS0095594Slightly white alabastrum(diploid) 3411.002
CNS0095595Whole white alabastrum(diploid) 2468.391
CNS0095596Whole white alabastrum(diploid) 3496.101
CNS0095597Whole white alabastrum(diploid) 4580.651
CNS0095598Silvery flower (diploied) 1333.969
CNS0095599Silvery flower (diploied) 2499.008
CNS0095600Silvery flower (diploied) 3978.690
CNS0095601Golden flower (diploid) 1428.583
CNS0095602Golden flower (diploid) 2706.593
CNS0095603Golden flower (diploid) 3679.034
CNS0095604Slightly white alabastrum(tetraploid) 1203.547
CNS0095605Slightly white alabastrum(tetraploid) 2217.662
CNS0095606Slightly white alabastrum(tetraploid) 3158.661
CNS0095607Whole white alabastrum(tetraploid) 1255.561
CNS0095608Whole white alabastrum(tetraploid) 2275.201
CNS0095609Whole white alabastrum(tetraploid) 3201.163
CNS0095610Silvery flower (tetraploid) 1428.152
CNS0095611Silvery flower (tetraploid) 2370.913
CNS0095612Silvery flower (tetraploid) 3144.525
CNS0095613Golden flower (tetraploid) 1214.552
CNS0095614Golden flower (tetraploid) 2289.347
CNS0095615Golden flower (tetraploid) 3544.416
CRA001975CRR073297Stem 1206.615
CRR073298Stem 2207.231
CRR073299Stem 3146.117
CRR073300Leaf 1292.285
CRR073301Leaf 2259.097
CRR073302Leaf 3197.020
CRR073303Juvenile bud 1327.456
CRR073304Juvenile bud 2239.862
CRR073305Juvenile bud 3364.823
CRR073306Third green 1638.090
CRR073307Third green 2586.998
CRR073308Third green 3623.769
CRR073309Second white 1337.316
CRR073310Second white 2684.272
CRR073311Second white 3599.400
CRR073312Silver flowering 1733.412
CRR073313Silver flowering 2588.897
CRR073314Silver flowering 3629.100
CRR073315Gold flowering 168.461
CRR073316Gold flowering 257.914
CRR073317Gold flowering 341.660
CRR073318Tawny withering 1108.673
CRR073319Tawny withering 2136.748
CRR073320Tawny withering 3113.948