Gene detail

Detail information of GWHGAAZE032871

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283435.1	9.17456E-79	PREDICTED: GPI mannosyltransferase 2 [Vitis vinifera]
trEMBL	tr\|D7SLG2\|D7SLG2_VITVI	3E-79	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16490.3}
TAIR10	AT1G11880.1	4E-56	transferases, transferring hexosyl groups

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000052	gene	96276	102460	+
GWHAAZE00000052	mRNA	96276	102460	+
GWHAAZE00000052	exon	96276	96455	+
GWHAAZE00000052	exon	97707	97941	+
GWHAAZE00000052	exon	101400	101600	+
GWHAAZE00000052	exon	102291	102460	+
GWHAAZE00000052	CDS	96276	96455	+
GWHAAZE00000052	CDS	97707	97941	+
GWHAAZE00000052	CDS	101400	101600	+
GWHAAZE00000052	CDS	102291	102460	+

Transcript Sequence
>GWHTAAZE032910 ATGCCAGTTGGCAGTGCAGGTTCTTATCAGGGAGCTTTATGCTTCTATTTGTGTTTTGTTCCATTTATTGCTTTTCAAGCATATGGCTACTATAATATTTGTCTTGGCCTGTGGAGGAAACTAGGCGTGGTGCAAGGCAAGAATTCCTTTGCTGTACAATTTTATTCAGAGTCACTATTGCTCATGTTTATAATTTCTTCTATGTCGGGAGTAGGGTTTTTAAGATATTTCCAGCTAAAACAGTTGCCAAATTTCCTACTTGCTTTGCCAATATTGTCACTAACTGTTTGTTCAATAATCTACTATGCGAAGCTACGAAGGGAGGTTTTTCTCTCACTTGGTTTCCGAGCTTCTCCTGTGGATAAGAAGTCTGCTGCTGTGTTCTTTTCTGTGGGGACAGAGTCAAGATCAAAAAAAGATCATGTTCTGAGACAGAGGAAACATAATATAAAAGGAGAGGATCCTGCAACGCTTGCACTCGATAATGATTCAACACACAACAAGCAAGGATATTTGTCGGTTATTGTTCTGCCTTTTCTTTTGCACTTGGGATTCATGTCAGCCACAGCATTTTTTGTCATGCATGTGCAGGTCAGCCTCCAACTTTATCTTATATGTTTCGACTCGTTCTTATCGCCAAGCCCTCCTCTCTACTGGTTCGCTTCTTACGTGATGGTACATCCTAGTAGTAAAAGTAAGATGTGGGGATATTTTATCTGGGCCTACTGCGCGGCCTACATCCTTCTCGGCAGTATACTCTTCTCCAACTTCTATCCTTTCACTTGA

Network for GWHGAAZE032871

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04188.14	Mannosyl_trans2	14	261	2.10E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07542	PIGV	Metabolic pathways	map01100
K07542	PIGV	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	biological_process	GPI anchor biosynthetic process
GO:0004584	molecular_function	obsolete dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.325
	SRR3591706	second leaf	0.138
	SRR3591707	mature leaf	0.228
	SRR3591708	Shoot apex	0.407
	SRR3591709	Stem	0.441
	SRR3591710	White floral bud	0.348
	SRR3591711	White flower	0.185
	SRR3591712	Green floral bud	0.473
	SRR3591713	Yellow flower	0.132
SRP173429	SRR8316895	Juvenile bud stage	0.263
	SRR8316896	Juvenile bud stage	0.237
	SRR8316897	Juvenile bud stage	0.037
	SRR8316894	Third green stage	0.145
	SRR8316900	Third green stage	0.241
	SRR8316901	Third green stage	0.238
	SRR8316898	Complete white stage	0.285
	SRR8316899	Complete white stage	0.436
	SRR8316903	Complete white stage	0.364
	SRR8316902	Silver flowering stage	0.111
	SRR8316904	Silver flowering stage	0.287
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.154
	SRR8316907	Gold flowering stage	0.213
	SRR8316908	Gold flowering stage	0.047
SRP132670	SRR6706286	Control	0.043
	SRR6706287	Light intensity 50%	0.065
	SRR6706288	Light intensity 20%	0.032
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.310
	CNS0095593	Slightly white alabastrum(diploid) 2	0.161
	CNS0095594	Slightly white alabastrum(diploid) 3	0.272
	CNS0095595	Whole white alabastrum(diploid) 2	0.452
	CNS0095596	Whole white alabastrum(diploid) 3	0.184
	CNS0095597	Whole white alabastrum(diploid) 4	0.531
	CNS0095598	Silvery flower (diploied) 1	0.267
	CNS0095599	Silvery flower (diploied) 2	0.444
	CNS0095600	Silvery flower (diploied) 3	0.196
	CNS0095601	Golden flower (diploid) 1	0.268
	CNS0095602	Golden flower (diploid) 2	0.069
	CNS0095603	Golden flower (diploid) 3	0.152
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.103
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.339
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.173
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.194
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.208
	CNS0095610	Silvery flower (tetraploid) 1	0.142
	CNS0095611	Silvery flower (tetraploid) 2	0.057
	CNS0095612	Silvery flower (tetraploid) 3	0.076
	CNS0095613	Golden flower (tetraploid) 1	0.032
	CNS0095614	Golden flower (tetraploid) 2	0.023
	CNS0095615	Golden flower (tetraploid) 3	0.022
CRA001975	CRR073297	Stem 1	0.084
	CRR073298	Stem 2	0.115
	CRR073299	Stem 3	0.059
	CRR073300	Leaf 1	0.033
	CRR073301	Leaf 2	0.046
	CRR073302	Leaf 3	0.052
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.026
	CRR073305	Juvenile bud 3	0.153
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.051
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.019
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.064
	CRR073316	Gold flowering 2	0.148
	CRR073317	Gold flowering 3	0.069
	CRR073318	Tawny withering 1	0.149
	CRR073319	Tawny withering 2	0.113
	CRR073320	Tawny withering 3	0.025