Gene detail

Detail information of GWHGAAZE032753

Functional Annotation

Database	Orthologs	Annotation
Nr	BAE79547.1	1-deoxyxylulose 5-phosphate synthase [Chrysanthemum x morifolium]
COG	YP_004985738.1	1-deoxy-D-xylulose 5-phosphate synthase
Swissprot	tr\|Q6YU51\|DXS2_ORYSJ	Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic (Precursor)
trEMBL	tr\|Q2HXK2\|Q2HXK2_CHRMO	1-deoxyxylulose 5-phosphate synthase {ECO:0000313\|EMBL:BAE79547.1}
TAIR10	AT4G15560.1	Deoxyxylulose-5-phosphate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000040	gene	538310	543673	-
GWHAAZE00000040	mRNA	538310	543673	-
GWHAAZE00000040	exon	538310	538456	-
GWHAAZE00000040	exon	538724	539008	-
GWHAAZE00000040	exon	539113	539394	-
GWHAAZE00000040	exon	539987	540294	-
GWHAAZE00000040	exon	540628	540901	-
GWHAAZE00000040	exon	541446	541717	-
GWHAAZE00000040	exon	542061	542211	-
GWHAAZE00000040	exon	542354	542518	-
GWHAAZE00000040	exon	543557	543673	-
GWHAAZE00000040	CDS	543557	543673	-
GWHAAZE00000040	CDS	542354	542518	-
GWHAAZE00000040	CDS	542061	542211	-
GWHAAZE00000040	CDS	541446	541717	-
GWHAAZE00000040	CDS	540628	540901	-
GWHAAZE00000040	CDS	539987	540294	-
GWHAAZE00000040	CDS	539113	539394	-
GWHAAZE00000040	CDS	538724	539008	-
GWHAAZE00000040	CDS	538310	538456	-

Transcript Sequence
>GWHTAAZE032791 ATGATGATAAGGAAAGAAAAAGAAGGACGGAAGATAGATTTCTCTGGAGAAAAGCCACCAACTCCCTTACTTGATACTATTAATTACCCTGTCCATATGAAAAATCTCTCCACAGAGGATCTTGAACAATTAGCAGCAGAGCTTAGAGCAGATATAGTATACACAGTGGCAAATATAGGTGGACATCTAAGTGCAAGCTTAGGAGTGGTGGAATTAGCTGTGGCTCTTCACCATGTTTTCAATACCCCTGATGATAGAATCATATGGGATGTTGGTCATCAGGCCTACCCACATAAAATTCTAACGGGGAGGAGGTCTAAAATGCACACAATAAGAAAAACATCAGGGCTAGCTGGATTTCCTAAAAGGGATGAGAGTATTTATGATGCTTTTGGTGCTGGCCATAGCTCTACTAGCATATCTGCTGGTCTTGGTATGGCTGTGGGGAGAGATTTATTAGGGAAGAAGAACAATGTAATATCAGTGATTGGAGATGGAGCTATGACTGCTGGACAAGCATATGAGGCCATGAATAATGCTGGCTTTCTTGATTCTAACCTCATTGTTATACTTAATGACAACAAGCAAGTCTCCTTGCCCACTGCCACTCTTGATGGCCCTGCTACCCCTGTTGGTGCCCTTAGCAGTACCCTATCCAAGCTCCAAGCCAGCCCCAAGTTCCGAAAGCTTCGTGAGGCTGCAAAAAGCATCACGAAGCAAATTGGACCCCAAGCACATGAAGTTGCAGCCAAAGTAGACGAATATGCCAGGGGAATGATTAGCGCTACCGGCTCTACTCTCTTTGAGGAGCTCGGATTGTACTACATAGGTCCAGTAGATGGGCACAATGTCGAAGATTTGGTCACCATTTTCGAGAAAGTTAAGTCTATGCCGGCACCAGGGCCAGTTTTGATCCACATTGTGACTGAGAAAGGCAAAGGCTATCCCCCGGCAGAGGCAGCAGCTGATAAAATGCACGGGGTTGTGAAGTTTGATGTGAAGACAGGGAAGCAATATAAGCCTAAGGCTGCTACACTTTCATATACTCAATATTTTGCCGAAGCGCTGATACAAGAAGCTGAGGAAGATAACAAGATTGTAGCAATCCATGCAGCCATGGGTGGTGGGACCGGCCTCAATTATTTCCAAAAGAGGTTCCCAGATCGATGTTTCGACGTGGGCATTGCTGAGCAACACGCTGTTACTTTCGCTGCTGGCTTAGCCACAGAGGGTCTCAAGCCATTTTGTGCTATCTATTCCTCTTTCCTACAAAGAGGCTATGACCAGGTGGTGCATGATGTAGATCTTCAAAAGTTACCTGTCCGATTCGCAATGGATCGAGCTGGTCTAGTCGGTGCAGATGGACCAACCCATTGTGGGGCATTTGACATCGCGTACATGGCTTGCTTGCCCAACATGGTGGTAATGGCTCCATCAGATGAAGCTGAGCTTATGCACATGGTCGCCACGGCTGCAGCCATTGATGATAGACCGAGCTGTTTTAGGTTCCCGAGGGGTAATGGAATAGGAGCCATTCTTCCACCTAATAACAAAGGAGTACCAATTGAGGTTGGAAAGGGGAGAATACTAATGGAAGGCAATAGAGTGGCAATACTGGGGTATGGTTCGATAGTACAACAATGTGTAGAGGCAGCAGGCTTTCTCAAATCCCACAACATATTTACGACTGTAGCCGATGCTCGCTTCTGCAAGCCATTGGATGCTGATTTGATCAAACGGTTGGCAAAGGAGCACGAGATCTTGATCACAGTAGAGGAAGGCTCGGTCGGAGGGTTTGGGTCCCATGTAGCCCATTTCCTAACATTAAATGGCATTCTTGATGGAAAGCTAAAGTTGAGAGCAATGGTACTTCCGGATAGATACATCGACCATGGAGCGCCCCAAGATCAGATGGAAGAGGCTGGTCTTTCTTCGAGGCATATATGCGCGACGGTTTTGTCGCTATTGGGTAGGCCTAAAGAAGCTCTTCAAGTTCAGTGA

Network for GWHGAAZE032753

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13292.7	DXP_synthase_N	24	309	4.70E-109
PF02779.25	Transket_pyr	346	507	1.70E-43
PF02780.21	Transketolase_C	525	648	5.30E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01662	dxs	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Thiamine metabolism	map00730
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0016114	biological_process	terpenoid biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0008661	molecular_function	1-deoxy-D-xylulose-5-phosphate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.176
	SRR3591706	second leaf	20.708
	SRR3591707	mature leaf	3.760
	SRR3591708	Shoot apex	7.413
	SRR3591709	Stem	1.052
	SRR3591710	White floral bud	341.939
	SRR3591711	White flower	549.411
	SRR3591712	Green floral bud	19.376
	SRR3591713	Yellow flower	328.785
SRP173429	SRR8316895	Juvenile bud stage	8.751
	SRR8316896	Juvenile bud stage	11.343
	SRR8316897	Juvenile bud stage	2.078
	SRR8316894	Third green stage	4.249
	SRR8316900	Third green stage	29.160
	SRR8316901	Third green stage	31.457
	SRR8316898	Complete white stage	305.620
	SRR8316899	Complete white stage	81.370
	SRR8316903	Complete white stage	394.997
	SRR8316902	Silver flowering stage	617.365
	SRR8316904	Silver flowering stage	808.486
	SRR8316905	Silver flowering stage	429.046
	SRR8316906	Gold flowering stage	1600.190
	SRR8316907	Gold flowering stage	1616.216
	SRR8316908	Gold flowering stage	1017.280
SRP132670	SRR6706286	Control	46.213
	SRR6706287	Light intensity 50%	64.149
	SRR6706288	Light intensity 20%	52.121
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.041
	CNS0095593	Slightly white alabastrum(diploid) 2	11.577
	CNS0095594	Slightly white alabastrum(diploid) 3	13.176
	CNS0095595	Whole white alabastrum(diploid) 2	25.447
	CNS0095596	Whole white alabastrum(diploid) 3	11.527
	CNS0095597	Whole white alabastrum(diploid) 4	25.279
	CNS0095598	Silvery flower (diploied) 1	78.599
	CNS0095599	Silvery flower (diploied) 2	96.242
	CNS0095600	Silvery flower (diploied) 3	568.621
	CNS0095601	Golden flower (diploid) 1	104.829
	CNS0095602	Golden flower (diploid) 2	343.420
	CNS0095603	Golden flower (diploid) 3	332.092
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.417
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.623
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.392
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.510
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.366
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.942
	CNS0095610	Silvery flower (tetraploid) 1	191.089
	CNS0095611	Silvery flower (tetraploid) 2	188.207
	CNS0095612	Silvery flower (tetraploid) 3	954.882
	CNS0095613	Golden flower (tetraploid) 1	243.931
	CNS0095614	Golden flower (tetraploid) 2	167.516
	CNS0095615	Golden flower (tetraploid) 3	326.472
CRA001975	CRR073297	Stem 1	14.755
	CRR073298	Stem 2	16.046
	CRR073299	Stem 3	10.104
	CRR073300	Leaf 1	49.062
	CRR073301	Leaf 2	36.087
	CRR073302	Leaf 3	32.684
	CRR073303	Juvenile bud 1	44.459
	CRR073304	Juvenile bud 2	83.371
	CRR073305	Juvenile bud 3	59.841
	CRR073306	Third green 1	1430.067
	CRR073307	Third green 2	736.971
	CRR073308	Third green 3	986.549
	CRR073309	Second white 1	1312.389
	CRR073310	Second white 2	1601.099
	CRR073311	Second white 3	1766.850
	CRR073312	Silver flowering 1	1376.416
	CRR073313	Silver flowering 2	1185.078
	CRR073314	Silver flowering 3	1147.615
	CRR073315	Gold flowering 1	0.272
	CRR073316	Gold flowering 2	1.352
	CRR073317	Gold flowering 3	1.858
	CRR073318	Tawny withering 1	7.720
	CRR073319	Tawny withering 2	9.108
	CRR073320	Tawny withering 3	6.039