Gene detail

Detail information of GWHGAAZE032648

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283435.1	4.7852E-72	PREDICTED: GPI mannosyltransferase 2 [Vitis vinifera]
trEMBL	tr\|D7SLG2\|D7SLG2_VITVI	2E-72	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16490.3}
TAIR10	AT1G11880.1	2E-48	transferases, transferring hexosyl groups

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000035	gene	215266	217977	+
GWHAAZE00000035	mRNA	215266	217977	+
GWHAAZE00000035	exon	215266	215539	+
GWHAAZE00000035	exon	216379	216554	+
GWHAAZE00000035	exon	217810	217977	+
GWHAAZE00000035	CDS	215266	215539	+
GWHAAZE00000035	CDS	216379	216554	+
GWHAAZE00000035	CDS	217810	217977	+

Transcript Sequence
>GWHTAAZE032686 ATGTTTATAATTTCTTCTGTCAGGGGAGTAGGGTTTTTAAGATATTTCCGGCTAAAACAGTTGCCAAATTTCCTACTTGCTTTCCCAATATTGTCACTAGCTGTTTGGTCAATCATCTACTATGCAAAGCTACGAAGGGAGGTTTTTCTCTCACTTGGTTTCCGAGCATCTCCTGTGGATAAGAAGTCTGCTGCTGTGTTCTTTTCTGTGGGGGCAGAGTCAAGCTCAAAAAGTGAATTTGTTTTGGAGAAAGAAACTGCTAAAATAAGTGAAGAAGATCGTGTTCTTAGTCGGAGGAAACAGAATATAAAAGGAGAGGATCCTGCAACGCTTTCACTTGATAGTGATTCAACACACAACAAGCAAGGATATTTGTCGGTTATTTTTCTGCCTTTTCTTTTGCACTTGGGATTCATGTCAGCCACAGCATTTTTTGTCATGCATGTGCAGGTTTTGACTCGGTTCTTATTGTCAAGCCCTCCTCTCTACTGGTTCGCCTCCTACGTGATGGTACATCCTAGCAGTAAAAGTAAGATATGGGGATATTTGATCTGGGCCTACTGTGCAGCCTACATCCTTGGCAGTATACTCTTCTCGAACTTCTATCCTTTCACTTGA

Network for GWHGAAZE032648

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04188.14	Mannosyl_trans2	2	205	3.30E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07542	PIGV	Metabolic pathways	map01100
K07542	PIGV	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	biological_process	GPI anchor biosynthetic process
GO:0004584	molecular_function	obsolete dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.628
	SRR3591706	second leaf	2.303
	SRR3591707	mature leaf	1.856
	SRR3591708	Shoot apex	3.152
	SRR3591709	Stem	1.842
	SRR3591710	White floral bud	1.451
	SRR3591711	White flower	1.102
	SRR3591712	Green floral bud	3.204
	SRR3591713	Yellow flower	0.507
SRP173429	SRR8316895	Juvenile bud stage	3.954
	SRR8316896	Juvenile bud stage	5.421
	SRR8316897	Juvenile bud stage	1.350
	SRR8316894	Third green stage	1.549
	SRR8316900	Third green stage	2.188
	SRR8316901	Third green stage	4.024
	SRR8316898	Complete white stage	0.849
	SRR8316899	Complete white stage	3.190
	SRR8316903	Complete white stage	1.850
	SRR8316902	Silver flowering stage	1.065
	SRR8316904	Silver flowering stage	1.629
	SRR8316905	Silver flowering stage	0.615
	SRR8316906	Gold flowering stage	1.867
	SRR8316907	Gold flowering stage	1.636
	SRR8316908	Gold flowering stage	2.085
SRP132670	SRR6706286	Control	1.064
	SRR6706287	Light intensity 50%	1.517
	SRR6706288	Light intensity 20%	1.435
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.629
	CNS0095593	Slightly white alabastrum(diploid) 2	3.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.971
	CNS0095595	Whole white alabastrum(diploid) 2	1.831
	CNS0095596	Whole white alabastrum(diploid) 3	1.541
	CNS0095597	Whole white alabastrum(diploid) 4	1.481
	CNS0095598	Silvery flower (diploied) 1	2.228
	CNS0095599	Silvery flower (diploied) 2	0.889
	CNS0095600	Silvery flower (diploied) 3	1.322
	CNS0095601	Golden flower (diploid) 1	1.106
	CNS0095602	Golden flower (diploid) 2	1.540
	CNS0095603	Golden flower (diploid) 3	0.838
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.509
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.706
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.542
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.466
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.820
	CNS0095610	Silvery flower (tetraploid) 1	0.536
	CNS0095611	Silvery flower (tetraploid) 2	0.186
	CNS0095612	Silvery flower (tetraploid) 3	0.488
	CNS0095613	Golden flower (tetraploid) 1	0.516
	CNS0095614	Golden flower (tetraploid) 2	0.293
	CNS0095615	Golden flower (tetraploid) 3	0.189
CRA001975	CRR073297	Stem 1	1.997
	CRR073298	Stem 2	2.056
	CRR073299	Stem 3	0.621
	CRR073300	Leaf 1	0.744
	CRR073301	Leaf 2	1.855
	CRR073302	Leaf 3	1.142
	CRR073303	Juvenile bud 1	0.625
	CRR073304	Juvenile bud 2	0.244
	CRR073305	Juvenile bud 3	0.507
	CRR073306	Third green 1	0.072
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.092
	CRR073309	Second white 1	0.056
	CRR073310	Second white 2	0.279
	CRR073311	Second white 3	0.077
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.737
	CRR073315	Gold flowering 1	0.064
	CRR073316	Gold flowering 2	0.527
	CRR073317	Gold flowering 3	0.241
	CRR073318	Tawny withering 1	0.625
	CRR073319	Tawny withering 2	1.337
	CRR073320	Tawny withering 3	1.444