Gene detail

Detail information of GWHGAAZE032541

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP26072.1	hypothetical protein JCGZ_21105 [Jatropha curcas]
COG	YP_007118384.1	thioredoxin reductase
Swissprot	tr\|Q70G58\|NTRC_ORYSJ	Thioredoxin reductase NTRC (Precursor)
trEMBL	tr\|A0A067JQA4\|A0A067JQA4_JATCU	Thioredoxin reductase {ECO:0000256\|RuleBase:RU003881}
TAIR10	AT2G41680.1	NADPH-dependent thioredoxin reductase C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000021	gene	4361673	4371933	+
GWHAAZE00000021	mRNA	4361673	4371933	+
GWHAAZE00000021	exon	4361673	4361851	+
GWHAAZE00000021	exon	4362432	4362484	+
GWHAAZE00000021	exon	4363702	4363906	+
GWHAAZE00000021	exon	4364033	4364133	+
GWHAAZE00000021	exon	4364380	4364498	+
GWHAAZE00000021	exon	4364813	4365078	+
GWHAAZE00000021	exon	4366122	4366194	+
GWHAAZE00000021	exon	4366303	4366362	+
GWHAAZE00000021	exon	4368439	4368741	+
GWHAAZE00000021	exon	4369916	4370023	+
GWHAAZE00000021	exon	4370360	4370446	+
GWHAAZE00000021	exon	4370608	4370712	+
GWHAAZE00000021	exon	4371355	4371485	+
GWHAAZE00000021	exon	4371873	4371933	+
GWHAAZE00000021	CDS	4361673	4361851	+
GWHAAZE00000021	CDS	4362432	4362484	+
GWHAAZE00000021	CDS	4363702	4363906	+
GWHAAZE00000021	CDS	4364033	4364133	+
GWHAAZE00000021	CDS	4364380	4364498	+
GWHAAZE00000021	CDS	4364813	4365078	+
GWHAAZE00000021	CDS	4366122	4366194	+
GWHAAZE00000021	CDS	4366303	4366362	+
GWHAAZE00000021	CDS	4368439	4368741	+
GWHAAZE00000021	CDS	4369916	4370023	+
GWHAAZE00000021	CDS	4370360	4370446	+
GWHAAZE00000021	CDS	4370608	4370712	+
GWHAAZE00000021	CDS	4371355	4371485	+
GWHAAZE00000021	CDS	4371873	4371933	+

Transcript Sequence
>GWHTAAZE032579 ATGGCTACCACTGCGAAGATAATCGCCATCGGAATCGGAACTAGTCTCACTCACCGACCACCTTCCGCCATGTCATCCTCTCCTTCTACTCTCTCCAATTCTCCCCTTCCCTTTCACCACCACCACCACACAACCTTTTACTCTTCAAAGGCGGCTTCACTCGCCGGCGCTTCCACTCCTGCAAATTGGTTCGTCTGTGCCCCTAATCCTATTCAAACTACTGTACTCTTAGCTCAAATCGAGAATTTGGTAATCATAGGATCAGGTCCTGCTGGGTACACAGCAGCAATTTATGCGGCTCGTGCCAACTTGAAGCCTCTAGTGTTTGAGGGATATCAGATTGGTGGTGTTCCTGGGGGACAACTGATGACTACCACTGAGGTGGAAAACTTTCCAGGTTTCCCAGATGGAATAACTGGTCCAGACTTGATGGATAAGATGCGACGGCAAGCTGAGCGTTGGGGAGCAGAATTATTCCAAGAAGATGTGGAATTCATTGATGTGAAGAACCGTCCTTTTGTTGTGCATAGTACCGATCCTGTCTTATTGTGGTGTCATGGGAATAAGTCAATTGATATTGTGATGGAGTGGTATGATATCATTGTTAGCTTCACGGTGGACATCTTATTGTCTTTGCTTATTCTCCATTTCTTTCTGGTCAAAAGCCATAGTGTTATTGTGGCCACTGGAGCCACAGCAAAAAGACTTGGATTACCTCGTGAAGAGGAATTTTGGAGTAGAGGAATTAGTGCTTGTGCAATTTGTGATGGAGCATCCCCACTGTTTAAGGGGCAAGTTCTTGCTGTGGTTGGAGGAGGGGATACTGCTACAGAGGAAGCATTATACTTAACTAAATATGCTCGTCATGTACATTTATTAGTACGTAGGGACCAGTTAAGGGCCTCCAGAGCAATGCAAGATAGTCGTTCTTCAAGAATGTATTTTGGGTCACTGAGATCTGAGGGAGGCAATGACTTGAGATGTCCTCATGAATGGGCTTCTCAAGGGCTGCTCGAATCCTCTTTTGTTGCTGTTGTCAAGGATGTACAGCCCAAGGTTGATTCTGGCGAATGTTTCAGAGTTATCAACAATCCGAACATCACGGTGCACTTCAATACAGAGACTGTGGATGTTGTTAGCAATATGAAAGGGCAAATGTCAGGGGTGTTGATACGAAAAGCTGATTCTGGGGAGGAATCTGTGCTGGAGGCTAAAGGCTTATTTTATGGGATAGGGCATTCACCAAATAGCCAGTTGTTGGAAGGCCAGGTTGACCTTGACGGCTCTGGCTATGTGTTGGTTGAGGAGGGTTCTGCAAAAACTTCCGTTGAAGGTGTTTTTGCAGCTGGTGACGTACAGGACCATGAGTGGAGGCAAGCCGTAACTGCAGCTGGATCAGGATGCATTGCTGCTCTCTCAGTGGAGAGATACCTTGCAAGCAATAATCTTCTTGTTGAATTTCACCAGCCCCGAACGGAAGAGGTCAAGAAGGAACTCACAACCAGAGATGTGCAAGAGGGTTTTGACATCTCTCTTACAAAGCACAGGGGCCAATATGCTCTAAGAAAGCTATACCATGAAAGTCCAAGGCTTATATGTGTCCTATATACATCACCGACATGTGGTCCATGTAGGACCTTGAAGCCAATTCTTAGCAAGGTGATAGATGAATATGACCAGAATGTTCATTTTGTCGAAATTGATATCGAGGAAGATCCAGAGGTTGCTGAGGCAGCTGGAATTATGGGTACTCCCTGTGTTCAATTTTTCAAGAACAAGGAAATGCTAAGGACTGTATCGGGAGTCAAAATGAAGAAAGAGTACAGAGAGTTCATTGAAACAAACAAGTGA

Network for GWHGAAZE032541

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07992.15	Pyr_redox_2	82	308	2.20E-22
PF07992.15	Pyr_redox_2	363	467	1.70E-11
PF00085.21	Thioredoxin	529	613	2.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00384	trxB, TRR	Selenocompound metabolism	map00450

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0045454	biological_process	cell redox homeostasis
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.268
	SRR3591706	second leaf	70.963
	SRR3591707	mature leaf	54.391
	SRR3591708	Shoot apex	38.792
	SRR3591709	Stem	17.508
	SRR3591710	White floral bud	29.893
	SRR3591711	White flower	29.602
	SRR3591712	Green floral bud	20.856
	SRR3591713	Yellow flower	32.877
SRP173429	SRR8316895	Juvenile bud stage	15.571
	SRR8316896	Juvenile bud stage	18.580
	SRR8316897	Juvenile bud stage	9.905
	SRR8316894	Third green stage	8.146
	SRR8316900	Third green stage	34.805
	SRR8316901	Third green stage	27.378
	SRR8316898	Complete white stage	21.198
	SRR8316899	Complete white stage	30.605
	SRR8316903	Complete white stage	24.219
	SRR8316902	Silver flowering stage	16.931
	SRR8316904	Silver flowering stage	22.136
	SRR8316905	Silver flowering stage	14.450
	SRR8316906	Gold flowering stage	40.218
	SRR8316907	Gold flowering stage	36.849
	SRR8316908	Gold flowering stage	42.948
SRP132670	SRR6706286	Control	33.645
	SRR6706287	Light intensity 50%	36.664
	SRR6706288	Light intensity 20%	38.640
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.656
	CNS0095593	Slightly white alabastrum(diploid) 2	10.826
	CNS0095594	Slightly white alabastrum(diploid) 3	11.354
	CNS0095595	Whole white alabastrum(diploid) 2	14.869
	CNS0095596	Whole white alabastrum(diploid) 3	15.884
	CNS0095597	Whole white alabastrum(diploid) 4	12.707
	CNS0095598	Silvery flower (diploied) 1	18.278
	CNS0095599	Silvery flower (diploied) 2	19.758
	CNS0095600	Silvery flower (diploied) 3	35.648
	CNS0095601	Golden flower (diploid) 1	18.091
	CNS0095602	Golden flower (diploid) 2	33.691
	CNS0095603	Golden flower (diploid) 3	31.189
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.635
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.664
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.671
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.888
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.478
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.094
	CNS0095610	Silvery flower (tetraploid) 1	38.192
	CNS0095611	Silvery flower (tetraploid) 2	44.771
	CNS0095612	Silvery flower (tetraploid) 3	33.216
	CNS0095613	Golden flower (tetraploid) 1	27.511
	CNS0095614	Golden flower (tetraploid) 2	36.181
	CNS0095615	Golden flower (tetraploid) 3	41.079
CRA001975	CRR073297	Stem 1	27.703
	CRR073298	Stem 2	23.299
	CRR073299	Stem 3	24.264
	CRR073300	Leaf 1	19.640
	CRR073301	Leaf 2	21.743
	CRR073302	Leaf 3	25.011
	CRR073303	Juvenile bud 1	22.198
	CRR073304	Juvenile bud 2	26.981
	CRR073305	Juvenile bud 3	16.210
	CRR073306	Third green 1	23.283
	CRR073307	Third green 2	15.236
	CRR073308	Third green 3	18.849
	CRR073309	Second white 1	28.275
	CRR073310	Second white 2	24.532
	CRR073311	Second white 3	20.746
	CRR073312	Silver flowering 1	22.052
	CRR073313	Silver flowering 2	21.533
	CRR073314	Silver flowering 3	18.925
	CRR073315	Gold flowering 1	58.243
	CRR073316	Gold flowering 2	72.918
	CRR073317	Gold flowering 3	50.399
	CRR073318	Tawny withering 1	11.139
	CRR073319	Tawny withering 2	11.129
	CRR073320	Tawny withering 3	10.104