Detail information of GWHGAAZE032395


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009630232.15.27956E-31PREDICTED: serine/threonine-protein kinase rio2 [Nicotiana tomentosiformis]
trEMBLtr|I1MZH4|I1MZH4_SOYBN4E-30Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G04910.1}
TAIR10AT3G51270.10.00004protein serine/threonine kinases;ATP binding;catalytics

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000021gene717026722012+
GWHAAZE00000021mRNA717026722012+
GWHAAZE00000021exon717026717235+
GWHAAZE00000021exon718976719077+
GWHAAZE00000021exon721800722012+
GWHAAZE00000021CDS717026717235+
GWHAAZE00000021CDS718976719077+
GWHAAZE00000021CDS721800722012+
Transcript Sequence

Network for GWHGAAZE032395

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07179RIOK2 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.145
SRR3591706second leaf23.306
SRR3591707mature leaf19.112
SRR3591708Shoot apex32.551
SRR3591709Stem21.958
SRR3591710White floral bud33.037
SRR3591711White flower35.624
SRR3591712Green floral bud42.616
SRR3591713Yellow flower38.353
SRP173429 SRR8316895Juvenile bud stage 26.971
SRR8316896Juvenile bud stage 33.041
SRR8316897Juvenile bud stage 19.632
SRR8316894Third green stage 10.245
SRR8316900Third green stage 33.704
SRR8316901Third green stage 34.002
SRR8316898Complete white stage 11.960
SRR8316899Complete white stage 38.482
SRR8316903Complete white stage 19.364
SRR8316902Silver flowering stage12.840
SRR8316904Silver flowering stage14.845
SRR8316905Silver flowering stage9.378
SRR8316906Gold flowering stage 23.400
SRR8316907Gold flowering stage 23.871
SRR8316908Gold flowering stage 18.592
SRP132670SRR6706286Control17.642
SRR6706287Light intensity 50%22.012
SRR6706288Light intensity 20%21.869
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.380
CNS0095593Slightly white alabastrum(diploid) 244.062
CNS0095594Slightly white alabastrum(diploid) 343.432
CNS0095595Whole white alabastrum(diploid) 235.174
CNS0095596Whole white alabastrum(diploid) 332.794
CNS0095597Whole white alabastrum(diploid) 426.939
CNS0095598Silvery flower (diploied) 129.276
CNS0095599Silvery flower (diploied) 227.692
CNS0095600Silvery flower (diploied) 318.279
CNS0095601Golden flower (diploid) 128.776
CNS0095602Golden flower (diploid) 216.181
CNS0095603Golden flower (diploid) 316.870
CNS0095604Slightly white alabastrum(tetraploid) 130.290
CNS0095605Slightly white alabastrum(tetraploid) 236.527
CNS0095606Slightly white alabastrum(tetraploid) 333.963
CNS0095607Whole white alabastrum(tetraploid) 121.931
CNS0095608Whole white alabastrum(tetraploid) 215.272
CNS0095609Whole white alabastrum(tetraploid) 323.340
CNS0095610Silvery flower (tetraploid) 117.572
CNS0095611Silvery flower (tetraploid) 216.012
CNS0095612Silvery flower (tetraploid) 313.519
CNS0095613Golden flower (tetraploid) 111.188
CNS0095614Golden flower (tetraploid) 216.433
CNS0095615Golden flower (tetraploid) 36.125
CRA001975CRR073297Stem 125.696
CRR073298Stem 220.223
CRR073299Stem 322.519
CRR073300Leaf 126.116
CRR073301Leaf 225.009
CRR073302Leaf 319.698
CRR073303Juvenile bud 127.456
CRR073304Juvenile bud 212.106
CRR073305Juvenile bud 320.297
CRR073306Third green 17.541
CRR073307Third green 26.890
CRR073308Third green 38.608
CRR073309Second white 111.697
CRR073310Second white 212.743
CRR073311Second white 312.055
CRR073312Silver flowering 110.609
CRR073313Silver flowering 28.721
CRR073314Silver flowering 39.254
CRR073315Gold flowering 19.894
CRR073316Gold flowering 220.299
CRR073317Gold flowering 311.012
CRR073318Tawny withering 118.328
CRR073319Tawny withering 227.419
CRR073320Tawny withering 329.667