Gene detail

Detail information of GWHGAAZE032334

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009770890.1	2.6156E-161	PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Nicotiana sylvestris]
Swissprot	tr\|P27524\|CB4A_SOLLC	3E-154	Chlorophyll a-b binding protein CP24 10A, chloroplastic (Precursor)
trEMBL	tr\|Q0PWS6\|Q0PWS6_TOBAC	1E-161	Chloroplast pigment-binding protein CP24 {ECO:0000313\|EMBL:ABG73416.1}
TAIR10	AT1G15820.1	2E-112	light harvesting complex photosystem II subunit 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000017	gene	105483	106537	+
GWHAAZE00000017	mRNA	105483	106537	+
GWHAAZE00000017	exon	105483	105709	+
GWHAAZE00000017	exon	105988	106537	+
GWHAAZE00000017	CDS	105483	105709	+
GWHAAZE00000017	CDS	105988	106537	+

Transcript Sequence
>GWHTAAZE032372 ATGGCTGCTACATCTGCTGCAGTACTAAATGGGTTGGGCTCTACCTTCATGTCCGGTGGGGCGAGGAGCCAGACCTTGTTGTCAAAACCCATTGCAGCTAAAGTTGGTGGTGATTCTCCCAAGAGGTTCCTTGTGGTTGTTGCAGCCGCGGCAGCACCTAAGAAGTCTTGGATCCCTGCTGTTAAAGGTGGTGGAAACTTACTTGACCCTGAGTGGCTCGACGGATCGCTCCCAGGTGACTTTGGGTTCGACCCGCTAGGACTAGGCAAGGACCCAGCGTTCCTGAAATGGTACAGAGAAGCCGAGCTGATCCACGGCCGATGGGCCATGGCTGCAGTTCTTGGCATCTTCGTGGGCCAGGCCTATAGTGGCATCCCATGGTTTGAAGCCGGAGCCGACCCAGGTGCCATTGCACCCTTCTCCTTCGGCTCTCTCCTTGGGACACAACTCTTCCTTATGGGTTGGGTGGAGAGCAAAAGATGGGTCGATTTCTTCAACCCGGAGTCACAATCAGTCGATTGGGCCACCCCATGGTCCAGGACCGCCGAAAATTTTGCTAATGCCACCGGTGAGCAAGGATACCCAGGCGGGAAATTCTTTGACCCATTGAGCCTGGCCGGGTCGATCCAGAACGGAGTCTACATCCCTGATTCCGAGAAGCTTGAGAGGTTGAAGCTTGCAGAGATTAAGCATGCTAGGCTTGCTATGTTAGCTATGTTGATTTTCTACTTCGAGGCAGGCCAAGGGAAAACACCCCTTGGTGCTCTTGGTTTGTAA

Network for GWHGAAZE032334

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	70	246	1.70E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08917	LHCB6	Metabolic pathways	map01100
K08917	LHCB6	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	156.597
	SRR3591706	second leaf	806.216
	SRR3591707	mature leaf	855.406
	SRR3591708	Shoot apex	324.468
	SRR3591709	Stem	109.294
	SRR3591710	White floral bud	6.466
	SRR3591711	White flower	10.105
	SRR3591712	Green floral bud	6.680
	SRR3591713	Yellow flower	0.704
SRP173429	SRR8316895	Juvenile bud stage	57.614
	SRR8316896	Juvenile bud stage	34.359
	SRR8316897	Juvenile bud stage	10.706
	SRR8316894	Third green stage	16.590
	SRR8316900	Third green stage	20.097
	SRR8316901	Third green stage	15.418
	SRR8316898	Complete white stage	2.744
	SRR8316899	Complete white stage	12.904
	SRR8316903	Complete white stage	6.874
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.612
	SRR8316905	Silver flowering stage	0.088
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.090
	SRR8316908	Gold flowering stage	0.317
SRP132670	SRR6706286	Control	24.920
	SRR6706287	Light intensity 50%	16.933
	SRR6706288	Light intensity 20%	15.197
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.572
	CNS0095593	Slightly white alabastrum(diploid) 2	35.554
	CNS0095594	Slightly white alabastrum(diploid) 3	37.406
	CNS0095595	Whole white alabastrum(diploid) 2	16.521
	CNS0095596	Whole white alabastrum(diploid) 3	15.278
	CNS0095597	Whole white alabastrum(diploid) 4	8.030
	CNS0095598	Silvery flower (diploied) 1	96.566
	CNS0095599	Silvery flower (diploied) 2	57.021
	CNS0095600	Silvery flower (diploied) 3	11.807
	CNS0095601	Golden flower (diploid) 1	87.475
	CNS0095602	Golden flower (diploid) 2	40.574
	CNS0095603	Golden flower (diploid) 3	35.556
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.423
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.005
	CNS0095606	Slightly white alabastrum(tetraploid) 3	66.590
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.823
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.371
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.536
	CNS0095610	Silvery flower (tetraploid) 1	1.980
	CNS0095611	Silvery flower (tetraploid) 2	11.176
	CNS0095612	Silvery flower (tetraploid) 3	0.370
	CNS0095613	Golden flower (tetraploid) 1	0.624
	CNS0095614	Golden flower (tetraploid) 2	10.348
	CNS0095615	Golden flower (tetraploid) 3	1.791
CRA001975	CRR073297	Stem 1	7.592
	CRR073298	Stem 2	6.771
	CRR073299	Stem 3	8.500
	CRR073300	Leaf 1	0.516
	CRR073301	Leaf 2	0.637
	CRR073302	Leaf 3	0.874
	CRR073303	Juvenile bud 1	0.488
	CRR073304	Juvenile bud 2	0.463
	CRR073305	Juvenile bud 3	0.361
	CRR073306	Third green 1	0.064
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.031
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	20.971
	CRR073316	Gold flowering 2	10.067
	CRR073317	Gold flowering 3	26.127
	CRR073318	Tawny withering 1	6.597
	CRR073319	Tawny withering 2	0.639
	CRR073320	Tawny withering 3	2.265