Gene detail

Detail information of GWHGAAZE032243

Functional Annotation

Database	Orthologs	Annotation
Nr	AID55339.1	1-deoxy-D-xylulose-5-phosphate synthase [Actinidia chinensis]
COG	YP_004985738.1	1-deoxy-D-xylulose 5-phosphate synthase
Swissprot	tr\|Q6YU51\|DXS2_ORYSJ	Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic (Precursor)
trEMBL	tr\|A0A075EC87\|A0A075EC87_ACTCH	1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000313\|EMBL:AID55339.1}
TAIR10	AT4G15560.1	Deoxyxylulose-5-phosphate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	73574678	73581343	+
GWHAAZE00000009	mRNA	73574678	73581343	+
GWHAAZE00000009	exon	73574678	73574698	+
GWHAAZE00000009	exon	73575674	73575730	+
GWHAAZE00000009	exon	73576367	73576531	+
GWHAAZE00000009	exon	73576857	73577279	+
GWHAAZE00000009	exon	73577888	73578161	+
GWHAAZE00000009	exon	73578253	73578560	+
GWHAAZE00000009	exon	73578793	73579074	+
GWHAAZE00000009	exon	73579545	73579829	+
GWHAAZE00000009	exon	73580169	73580283	+
GWHAAZE00000009	exon	73581321	73581343	+
GWHAAZE00000009	CDS	73574678	73574698	+
GWHAAZE00000009	CDS	73575674	73575730	+
GWHAAZE00000009	CDS	73576367	73576531	+
GWHAAZE00000009	CDS	73576857	73577279	+
GWHAAZE00000009	CDS	73577888	73578161	+
GWHAAZE00000009	CDS	73578253	73578560	+
GWHAAZE00000009	CDS	73578793	73579074	+
GWHAAZE00000009	CDS	73579545	73579829	+
GWHAAZE00000009	CDS	73580169	73580283	+
GWHAAZE00000009	CDS	73581321	73581343	+

Transcript Sequence
>GWHTAAZE032281 ATGCTAAAATCGTTGTTTAAGATTAATGGAGTTATAACTGCAAAGTACAACGATGGAAGCAATGATAATGACATCATGGAGCTTGAAAAGTTGGCTGATGAACTCCGGGAAGAGATTGTACACACAGTTTCTAAAATTGGTGGCCACTTAAGCTCAAGCCTAGGCGTGGCTGAGCTCACTGTCGCACTTCATCATGTGTTCAACACTCCTGATGATAAGATCATCTGGGATGTGGGCCATCAGGCATACCCTCATAAGATTTTAACTGGAAGGAGGTCGAAAATGAACACCATACGACAAACATGTGGCCTAGCAGGCTTCCCAAAAAGGGACGAGAGCATGCACGACGCATTTGGCGCAGGTCATAGTTCAACTAGCATTTCAGCCGGGTTAGGGATGGCGGTTGGAAGAGACTTATTGGGGAAGGACAATCACGTGATCGCTGTAATTGGTGATGGGGCAATGACAGCCGGTCAAGCATACGAGGCGATGAATAATGCTGGGTATCTTGATTCAAATCTTATAATCATTTTGAACGATAATAGACAAGTTTCTCTGCCGACTGCCACCGTTGATGGCCCTCGCGCAACCTGTTGGAGCTTTGAGCAAAGCTCTTACAAGGTTACAATCAAGTCGAAGCTTCGCCAGCTTCGTGAAGTAGCAAAAGGAGTGACAAAGCAATTGGGGGACCAGACCCACAAGATTGCGGCCAAGGTGGACGCATACATGAAAGGGATGACTGGTGGCCAAGGGGTTTCGTTGTTTGAGGAGCTGGGGCTGTATTATATTGGTCCAGTTGATGGTCACAATGTTGAAGATCTTGTTTATATTTTGAACAAAGTGAAGGCTATGCCAGCTTCAGGCCCTGTTCTTATTCACATTATTACTGAAAAAGGAAAAGGCTATCCTCCTGCTGAAGTTGCTGCTGATAAAATGCATGGTGTAGTGAAATTTGATCCCCAAACGGGAAAGCAGTCAAAGACAAAATCAAGAACACTTTCATACACCCAATATTTTGCCGAGTCTTTAATCGCTGAAGCAGAGAGAGACGATAAAATCGTAGCGATTCACGCTGCTATGGGAGGTGGAACTGGCCTCAATGCATTCCAAAAACGTTTTCCTCACCGATGTTTTGATGTTGGGATTGCCGAACAACACGCGGTCACCTTTGCAGCTGGTTTAGCAACTGAAGGCCTCAAGCCCTTTTGTGCCATTTACTCGTCCTTTCTACAACGTGGTTATGATCAGGTTGTTCATGATGTGGATCTTCAAAAGCTTCCGGTAAGATTTGCAATGGATAGGGCTGGCCTTGTGGGTGCGGACGGTCCAACACATTGTGGGGCATTTGACACGACTTTCATGGCTTGTTTACCAAACATGGTAGTAATGGCTCCTTCGTGCGAGAGAGAGCTAATCAACATGGTTGCCACAGCGGCAGCTATAGATGATCGGCCGAGTTGCTTTAGGTACCCTAGAGGAAATGGCATCGGTTCCATTCTTCAACCAGACTACAAAGGAATCCCTCTTGAGGTTGGAAGAGGAAGAGTGATAAGAGAAGGAAGTAGAGTGGCCATACTAGGCTATGGTACCATGGTGCAAAATTGCTTAGAAGCTGCAGAGTTGCTCCAAGTTCTCGGAGTATCGACCACAGTGGCCGATGCACGATTTTGCAAGCCTCTTGATGGAAATTTGGTGAGGCAACTGGCTCAAGAACATGAAGTTCTTATCACTGTTGAAGAAGGATCAATTGGAGGATTTGGCTCTCATGTTTCTCATTTCATGGGCTTGAATGGATTACTTGATGGAAATCTTAAGTGGAGAGCAATGATGCTACCTGACAGATATATTGAGCATGGGGCACAAACAAACCAAATTGAAGAGGCTGGGCTTAGTTCAAAGCAAATTGCAGCCACTGTTTTGTCACTAATTGGCATTTTTGTTGTTTGTTCCTAA

Network for GWHGAAZE032243

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13292.7	DXP_synthase_N	26	296	8.50E-100
PF02779.25	Transket_pyr	332	494	4.10E-39
PF02780.21	Transketolase_C	512	635	5.60E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01662	dxs	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Thiamine metabolism	map00730
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0016114	biological_process	terpenoid biosynthetic process
GO:0008661	molecular_function	1-deoxy-D-xylulose-5-phosphate synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.346
	SRR3591706	second leaf	28.993
	SRR3591707	mature leaf	12.655
	SRR3591708	Shoot apex	10.424
	SRR3591709	Stem	0.567
	SRR3591710	White floral bud	32.696
	SRR3591711	White flower	57.999
	SRR3591712	Green floral bud	17.352
	SRR3591713	Yellow flower	44.381
SRP173429	SRR8316895	Juvenile bud stage	10.535
	SRR8316896	Juvenile bud stage	5.854
	SRR8316897	Juvenile bud stage	4.005
	SRR8316894	Third green stage	0.844
	SRR8316900	Third green stage	2.243
	SRR8316901	Third green stage	4.838
	SRR8316898	Complete white stage	2.566
	SRR8316899	Complete white stage	31.353
	SRR8316903	Complete white stage	5.324
	SRR8316902	Silver flowering stage	156.845
	SRR8316904	Silver flowering stage	254.000
	SRR8316905	Silver flowering stage	139.776
	SRR8316906	Gold flowering stage	681.270
	SRR8316907	Gold flowering stage	614.271
	SRR8316908	Gold flowering stage	598.216
SRP132670	SRR6706286	Control	3.661
	SRR6706287	Light intensity 50%	4.383
	SRR6706288	Light intensity 20%	6.384
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.385
	CNS0095593	Slightly white alabastrum(diploid) 2	5.374
	CNS0095594	Slightly white alabastrum(diploid) 3	8.594
	CNS0095595	Whole white alabastrum(diploid) 2	9.357
	CNS0095596	Whole white alabastrum(diploid) 3	1.699
	CNS0095597	Whole white alabastrum(diploid) 4	14.457
	CNS0095598	Silvery flower (diploied) 1	9.684
	CNS0095599	Silvery flower (diploied) 2	4.518
	CNS0095600	Silvery flower (diploied) 3	17.726
	CNS0095601	Golden flower (diploid) 1	4.082
	CNS0095602	Golden flower (diploid) 2	22.105
	CNS0095603	Golden flower (diploid) 3	21.896
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.746
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.321
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.846
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.904
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.299
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.575
	CNS0095610	Silvery flower (tetraploid) 1	17.712
	CNS0095611	Silvery flower (tetraploid) 2	30.318
	CNS0095612	Silvery flower (tetraploid) 3	997.772
	CNS0095613	Golden flower (tetraploid) 1	114.891
	CNS0095614	Golden flower (tetraploid) 2	26.282
	CNS0095615	Golden flower (tetraploid) 3	195.987
CRA001975	CRR073297	Stem 1	6.236
	CRR073298	Stem 2	12.259
	CRR073299	Stem 3	8.223
	CRR073300	Leaf 1	4.836
	CRR073301	Leaf 2	3.571
	CRR073302	Leaf 3	5.841
	CRR073303	Juvenile bud 1	5.817
	CRR073304	Juvenile bud 2	10.445
	CRR073305	Juvenile bud 3	3.710
	CRR073306	Third green 1	1252.503
	CRR073307	Third green 2	655.533
	CRR073308	Third green 3	842.745
	CRR073309	Second white 1	1158.931
	CRR073310	Second white 2	1591.214
	CRR073311	Second white 3	1537.309
	CRR073312	Silver flowering 1	1055.290
	CRR073313	Silver flowering 2	874.776
	CRR073314	Silver flowering 3	824.313
	CRR073315	Gold flowering 1	1.519
	CRR073316	Gold flowering 2	3.882
	CRR073317	Gold flowering 3	3.744
	CRR073318	Tawny withering 1	4.963
	CRR073319	Tawny withering 2	15.685
	CRR073320	Tawny withering 3	2.987