Gene detail

Detail information of GWHGAAZE032192

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007222683.1	0	hypothetical protein PRUPE_ppa008630mg [Prunus persica]
COG	YP_004930200.1	2E-146	NAD-dependent epimerase/dehydratase
Swissprot	tr\|O49213\|FCL1_ARATH	0	GDP-L-fucose synthase 1
trEMBL	tr\|M5XCN9\|M5XCN9_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23882.1}
TAIR10	AT1G73250.1	1E-149	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	72426054	72428150	-
GWHAAZE00000009	mRNA	72426054	72428150	-
GWHAAZE00000009	exon	72428095	72428150	-
GWHAAZE00000009	exon	72427400	72427792	-
GWHAAZE00000009	exon	72426054	72426601	-
GWHAAZE00000009	five_prime_UTR	72428114	72428150	-
GWHAAZE00000009	CDS	72428095	72428113	-
GWHAAZE00000009	CDS	72427400	72427792	-
GWHAAZE00000009	CDS	72426054	72426601	-

Transcript Sequence
>GWHTAAZE032230 ATGTAAAACATTTGGTCACCTTCATCTTCACATCAAGATGGGAAGCCTCAACAATGATCCGATTACAATCGAAAAATCAGCGAAGATCTTCATCGCCGGTCACCGAGGCCTAGTCGGATCCGCCATAGTCCGTAAGCTCAACCAGCTAGGGTTCACCAACCTTCTCCTCAAATCCCACTCCGAACTAGACCTAACTCGCCAAAACGACGTCGAATCATTCTTTCAGTCGGAAAAGCCCCAATTCGTCATACTCGCAGCCGCTAAGGTCGGTGGAATACATGCCAACAACACTTATCCTGCCGATTTCATCGCTGTAAATCTCCAGATCCAAACCAATGTCATTGATTCTTCGTACCGAAATGGAGTGAAAAAACTCATCTTTTTGGGATCTTCGTGTATTTACCCTAAATTCGCACCGCAGCCTATTCCCGAAGAAGCTCTGCTCACAGGTCCGCTAGAGCCTACAAATGAATGGTACGCGATTGCGAAGATCTCCGGCATTAAAATGTGCCAAGCGTATCGGATTCAGTACAATTGGGATGCAATTTCGGCAATGCCGACGAATTTGTATGGCCCGAATGATAATTTTCACCCCGAAAATTCGCATGTTTTGCCTGCACTGATGAGGCGATTTCATGAGGCAAAAGTTACAGGGGCCAAGGAAGTTGTAGTGTGGGGTACAGGGTCACCGTTGAGGGAGTTTTGCATGTTGACGATTTGGCGGCCAATTGTTTACTTGCTGGAGAATTACAGCGGCTTAGACCATGTGAATGTAGGGAGTGGGAAAGAGGTGACTATTAAGGAGCTTGCAGAGTTGGTCAAGGAGGTCGTAGGTTTTGAAGGGGAGCTAAAGTGGGACAGTTCTAAGCCCGATGGTACCCCTAGGAAGCTCATGGATAGCTCGAAGCTAGTGAATTTGGGTTGGGTCCCTAAGGTTTCACTTAGGGAAGGGCTTGTTAATACCTATCAATGGTATTTGCAGAATGTCAAGCAATAG

Network for GWHGAAZE032192

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01370.22	Epimerase	17	225	2.40E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02377	TSTA3, fcl	Metabolic pathways	map01100
		Fructose and mannose metabolism	map00051
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009226	biological_process	nucleotide-sugar biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity
GO:0050662	molecular_function	coenzyme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.512
	SRR3591706	second leaf	17.699
	SRR3591707	mature leaf	7.652
	SRR3591708	Shoot apex	35.784
	SRR3591709	Stem	35.665
	SRR3591710	White floral bud	23.191
	SRR3591711	White flower	18.133
	SRR3591712	Green floral bud	36.544
	SRR3591713	Yellow flower	11.876
SRP173429	SRR8316895	Juvenile bud stage	17.118
	SRR8316896	Juvenile bud stage	26.842
	SRR8316897	Juvenile bud stage	2.748
	SRR8316894	Third green stage	10.668
	SRR8316900	Third green stage	36.384
	SRR8316901	Third green stage	33.323
	SRR8316898	Complete white stage	15.576
	SRR8316899	Complete white stage	41.105
	SRR8316903	Complete white stage	17.366
	SRR8316902	Silver flowering stage	7.104
	SRR8316904	Silver flowering stage	12.109
	SRR8316905	Silver flowering stage	4.950
	SRR8316906	Gold flowering stage	13.227
	SRR8316907	Gold flowering stage	15.556
	SRR8316908	Gold flowering stage	6.360
SRP132670	SRR6706286	Control	53.615
	SRR6706287	Light intensity 50%	53.786
	SRR6706288	Light intensity 20%	56.747
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.679
	CNS0095593	Slightly white alabastrum(diploid) 2	28.694
	CNS0095594	Slightly white alabastrum(diploid) 3	20.079
	CNS0095595	Whole white alabastrum(diploid) 2	25.109
	CNS0095596	Whole white alabastrum(diploid) 3	21.421
	CNS0095597	Whole white alabastrum(diploid) 4	21.623
	CNS0095598	Silvery flower (diploied) 1	13.852
	CNS0095599	Silvery flower (diploied) 2	18.249
	CNS0095600	Silvery flower (diploied) 3	18.083
	CNS0095601	Golden flower (diploid) 1	12.739
	CNS0095602	Golden flower (diploid) 2	18.049
	CNS0095603	Golden flower (diploid) 3	17.623
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.190
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.319
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.559
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.332
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.861
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.857
	CNS0095610	Silvery flower (tetraploid) 1	16.295
	CNS0095611	Silvery flower (tetraploid) 2	14.824
	CNS0095612	Silvery flower (tetraploid) 3	16.183
	CNS0095613	Golden flower (tetraploid) 1	11.208
	CNS0095614	Golden flower (tetraploid) 2	15.884
	CNS0095615	Golden flower (tetraploid) 3	9.200
CRA001975	CRR073297	Stem 1	39.360
	CRR073298	Stem 2	40.211
	CRR073299	Stem 3	44.985
	CRR073300	Leaf 1	40.997
	CRR073301	Leaf 2	50.052
	CRR073302	Leaf 3	54.048
	CRR073303	Juvenile bud 1	48.439
	CRR073304	Juvenile bud 2	59.025
	CRR073305	Juvenile bud 3	45.468
	CRR073306	Third green 1	28.152
	CRR073307	Third green 2	31.667
	CRR073308	Third green 3	30.664
	CRR073309	Second white 1	16.982
	CRR073310	Second white 2	12.518
	CRR073311	Second white 3	7.214
	CRR073312	Silver flowering 1	9.696
	CRR073313	Silver flowering 2	12.534
	CRR073314	Silver flowering 3	8.202
	CRR073315	Gold flowering 1	22.001
	CRR073316	Gold flowering 2	28.943
	CRR073317	Gold flowering 3	26.042
	CRR073318	Tawny withering 1	42.859
	CRR073319	Tawny withering 2	28.029
	CRR073320	Tawny withering 3	48.024