Gene detail

Detail information of GWHGAAZE032189

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007222683.1	0	hypothetical protein PRUPE_ppa008630mg [Prunus persica]
COG	YP_003526872.1	4E-153	NAD-dependent epimerase/dehydratase
Swissprot	tr\|O49213\|FCL1_ARATH	0	GDP-L-fucose synthase 1
trEMBL	tr\|M5XCN9\|M5XCN9_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23882.1}
TAIR10	AT1G17890.1	8E-151	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	72368446	72370510	-
GWHAAZE00000009	mRNA	72368446	72370510	-
GWHAAZE00000009	exon	72370454	72370510	-
GWHAAZE00000009	exon	72369761	72370153	-
GWHAAZE00000009	exon	72368446	72368996	-
GWHAAZE00000009	five_prime_UTR	72370473	72370510	-
GWHAAZE00000009	CDS	72370454	72370472	-
GWHAAZE00000009	CDS	72369761	72370153	-
GWHAAZE00000009	CDS	72368446	72368996	-

Transcript Sequence
>GWHTAAZE032227 ATGTAAAAACATTTGGTCACTTTCATCTTCACATCAAGATGGGAAGCCTCAACAATGATCCGATTACAATCGAAAAATCAGCGAAGATCTTCATCGCCGGTCACCGAGGCCTAGTCGGATCCGCCATAGTCCGTAAGCTCAACCAGCTAGGGTTCACCAACCTTCTCCTCAAATCCCACTCCGAACTAGACCTAACTCGCCAAAACGACGTCGAATCATTCTTTCAGTCGGAAAAGCCCCAATTCGTCATACTCGCAGCCGCTAAGGTCGGTGGAATACATGCCAACAACACTTATCCTGCCGATTTCATCGCTGTAAATCTCCAGATCCAAACCAATGTCATTGATTCTTCGTACCGAAATGGAGTGAGAAAACTCATCTTTTTGGGATCTTCGTGTATTTACCCTAAATTCGCACCGCAGCCTATTCCCGAAGAAGCTCTGCTCACAGGTCCGCTAGAGCCTACAAATGAATGGTATGCGATTGCGAAGATCTCCGGCATTAAAATGTGCCAAGCGTATCGGATTCAGTACAATTGGGATGCAATTTCGGCAATGCCGACGAATTTGTATGGCCCGAATGATAATTTTCACCCCGAAAATTCGCATGTTTTGCCTGCACTGATGAGGCGATTTCATGAGGCAAAAGTTACAGTGGCCAAGGAAGTTGTAGTGTGGGGTACAGGGTCACCGTTGAGGGAGTTTTTGCATGTTGACGATTTGGCCGACGCAATTGTTTACTTGCTGGAGAATTACAGCGGCTTAGACCATGTGAATGTAGGGAGTGGGAAAGAGGTGACTATTAAGGAGCTTGCAGAGTTGGTCAAGGAGGTCGTAGGTTTTGAAGGGGAGCTAAAGTGGGACAGTTCTAAGCCCGATGGTACCCCTAGGAAGCTCATGGATAGCTCGAAGCTAGCGAATTTGGGTTGGGTCCCTAAGGTTTCACTTAGGGAAGGGCTTGTTAATACCTATCAATGGTATTTGCAGAATGTCAAGCAATAG

Network for GWHGAAZE032189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01370.22	Epimerase	17	248	1.90E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02377	TSTA3, fcl	Metabolic pathways	map01100
		Fructose and mannose metabolism	map00051
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009226	biological_process	nucleotide-sugar biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0050662	molecular_function	coenzyme binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.125
	SRR3591706	second leaf	20.760
	SRR3591707	mature leaf	10.484
	SRR3591708	Shoot apex	43.436
	SRR3591709	Stem	39.856
	SRR3591710	White floral bud	29.317
	SRR3591711	White flower	19.595
	SRR3591712	Green floral bud	40.933
	SRR3591713	Yellow flower	13.468
SRP173429	SRR8316895	Juvenile bud stage	26.250
	SRR8316896	Juvenile bud stage	34.858
	SRR8316897	Juvenile bud stage	24.405
	SRR8316894	Third green stage	14.596
	SRR8316900	Third green stage	40.374
	SRR8316901	Third green stage	39.369
	SRR8316898	Complete white stage	17.864
	SRR8316899	Complete white stage	49.365
	SRR8316903	Complete white stage	21.383
	SRR8316902	Silver flowering stage	8.560
	SRR8316904	Silver flowering stage	13.691
	SRR8316905	Silver flowering stage	7.269
	SRR8316906	Gold flowering stage	16.038
	SRR8316907	Gold flowering stage	17.944
	SRR8316908	Gold flowering stage	23.979
SRP132670	SRR6706286	Control	58.086
	SRR6706287	Light intensity 50%	61.115
	SRR6706288	Light intensity 20%	65.658
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.462
	CNS0095593	Slightly white alabastrum(diploid) 2	41.319
	CNS0095594	Slightly white alabastrum(diploid) 3	36.693
	CNS0095595	Whole white alabastrum(diploid) 2	33.722
	CNS0095596	Whole white alabastrum(diploid) 3	34.063
	CNS0095597	Whole white alabastrum(diploid) 4	30.853
	CNS0095598	Silvery flower (diploied) 1	21.586
	CNS0095599	Silvery flower (diploied) 2	25.402
	CNS0095600	Silvery flower (diploied) 3	24.880
	CNS0095601	Golden flower (diploid) 1	23.286
	CNS0095602	Golden flower (diploid) 2	25.262
	CNS0095603	Golden flower (diploid) 3	24.964
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.213
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.008
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.766
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.172
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.305
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.837
	CNS0095610	Silvery flower (tetraploid) 1	28.043
	CNS0095611	Silvery flower (tetraploid) 2	23.378
	CNS0095612	Silvery flower (tetraploid) 3	24.081
	CNS0095613	Golden flower (tetraploid) 1	20.614
	CNS0095614	Golden flower (tetraploid) 2	24.351
	CNS0095615	Golden flower (tetraploid) 3	12.871
CRA001975	CRR073297	Stem 1	50.750
	CRR073298	Stem 2	54.764
	CRR073299	Stem 3	59.554
	CRR073300	Leaf 1	49.639
	CRR073301	Leaf 2	55.824
	CRR073302	Leaf 3	60.937
	CRR073303	Juvenile bud 1	52.921
	CRR073304	Juvenile bud 2	63.713
	CRR073305	Juvenile bud 3	55.131
	CRR073306	Third green 1	31.930
	CRR073307	Third green 2	37.657
	CRR073308	Third green 3	35.486
	CRR073309	Second white 1	23.584
	CRR073310	Second white 2	13.785
	CRR073311	Second white 3	8.913
	CRR073312	Silver flowering 1	10.169
	CRR073313	Silver flowering 2	11.382
	CRR073314	Silver flowering 3	11.453
	CRR073315	Gold flowering 1	30.739
	CRR073316	Gold flowering 2	36.268
	CRR073317	Gold flowering 3	37.067
	CRR073318	Tawny withering 1	51.553
	CRR073319	Tawny withering 2	38.765
	CRR073320	Tawny withering 3	55.142