Detail information of GWHGAAZE032094


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP19981.10unnamed protein product [Coffea canephora]
Swissprottr|Q9SDG8|AGO4A_ORYSJ0Protein argonaute 4A
trEMBLtr|A0A068VGY8|A0A068VGY8_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_814 {ECO:0000313|EMBL:CDP19981.1}
TAIR10AT2G27040.20Argonaute family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7042692970434224-
GWHAAZE00000009mRNA7042692970434224-
GWHAAZE00000009exon7042692970426937-
GWHAAZE00000009exon7042765670427804-
GWHAAZE00000009exon7042848770428518-
GWHAAZE00000009exon7042861770428711-
GWHAAZE00000009exon7042899470429067-
GWHAAZE00000009exon7042937770429488-
GWHAAZE00000009exon7042957670429639-
GWHAAZE00000009exon7043005270430117-
GWHAAZE00000009exon7043027970430409-
GWHAAZE00000009exon7043051770430654-
GWHAAZE00000009exon7043099270431104-
GWHAAZE00000009exon7043119270431357-
GWHAAZE00000009exon7043144470431575-
GWHAAZE00000009exon7043164270431704-
GWHAAZE00000009exon7043179570431902-
GWHAAZE00000009exon7043201470432130-
GWHAAZE00000009exon7043221370432381-
GWHAAZE00000009exon7043248870432585-
GWHAAZE00000009exon7043267870432775-
GWHAAZE00000009exon7043286470433000-
GWHAAZE00000009exon7043307170433295-
GWHAAZE00000009exon7043337370433578-
GWHAAZE00000009exon7043369270434224-
GWHAAZE00000009five_prime_UTR7043387870434224-
GWHAAZE00000009CDS7043369270433877-
GWHAAZE00000009CDS7043337370433578-
GWHAAZE00000009CDS7043307170433295-
GWHAAZE00000009CDS7043286470433000-
GWHAAZE00000009CDS7043267870432775-
GWHAAZE00000009CDS7043248870432585-
GWHAAZE00000009CDS7043221370432381-
GWHAAZE00000009CDS7043201470432130-
GWHAAZE00000009CDS7043179570431902-
GWHAAZE00000009CDS7043164270431704-
GWHAAZE00000009CDS7043144470431575-
GWHAAZE00000009CDS7043119270431357-
GWHAAZE00000009CDS7043099270431104-
GWHAAZE00000009CDS7043051770430654-
GWHAAZE00000009CDS7043027970430409-
GWHAAZE00000009CDS7043005270430117-
GWHAAZE00000009CDS7042957670429639-
GWHAAZE00000009CDS7042937770429488-
GWHAAZE00000009CDS7042899470429067-
GWHAAZE00000009CDS7042861770428711-
GWHAAZE00000009CDS7042848770428518-
GWHAAZE00000009CDS7042765670427804-
GWHAAZE00000009CDS7042692970426937-
Transcript Sequence

Network for GWHGAAZE032094

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16486.6ArgoN391999.10E-28
PF08699.11ArgoL12112595.10E-17
PF02170.23PAZ2653955.40E-24
PF16488.6ArgoL24054505.80E-12
PF02171.18Piwi5558623.20E-105
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11593ELF2C, AGO Axon regeneration map04361

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.161
SRR3591706second leaf0.182
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.560
SRR3591709Stem0.265
SRR3591710White floral bud2.429
SRR3591711White flower3.816
SRR3591712Green floral bud2.044
SRR3591713Yellow flower5.091
SRP173429 SRR8316895Juvenile bud stage 11.135
SRR8316896Juvenile bud stage 14.710
SRR8316897Juvenile bud stage 5.758
SRR8316894Third green stage 7.397
SRR8316900Third green stage 26.235
SRR8316901Third green stage 12.936
SRR8316898Complete white stage 6.888
SRR8316899Complete white stage 12.302
SRR8316903Complete white stage 7.285
SRR8316902Silver flowering stage11.787
SRR8316904Silver flowering stage18.637
SRR8316905Silver flowering stage8.280
SRR8316906Gold flowering stage 31.487
SRR8316907Gold flowering stage 30.856
SRR8316908Gold flowering stage 21.181
SRP132670SRR6706286Control13.875
SRR6706287Light intensity 50%16.969
SRR6706288Light intensity 20%17.201
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.126
CNS0095593Slightly white alabastrum(diploid) 27.535
CNS0095594Slightly white alabastrum(diploid) 34.460
CNS0095595Whole white alabastrum(diploid) 28.777
CNS0095596Whole white alabastrum(diploid) 313.546
CNS0095597Whole white alabastrum(diploid) 410.099
CNS0095598Silvery flower (diploied) 13.031
CNS0095599Silvery flower (diploied) 25.301
CNS0095600Silvery flower (diploied) 323.967
CNS0095601Golden flower (diploid) 13.596
CNS0095602Golden flower (diploid) 216.898
CNS0095603Golden flower (diploid) 315.640
CNS0095604Slightly white alabastrum(tetraploid) 113.805
CNS0095605Slightly white alabastrum(tetraploid) 212.923
CNS0095606Slightly white alabastrum(tetraploid) 317.778
CNS0095607Whole white alabastrum(tetraploid) 16.305
CNS0095608Whole white alabastrum(tetraploid) 28.886
CNS0095609Whole white alabastrum(tetraploid) 329.417
CNS0095610Silvery flower (tetraploid) 125.216
CNS0095611Silvery flower (tetraploid) 228.114
CNS0095612Silvery flower (tetraploid) 341.333
CNS0095613Golden flower (tetraploid) 116.923
CNS0095614Golden flower (tetraploid) 232.874
CNS0095615Golden flower (tetraploid) 330.771
CRA001975CRR073297Stem 119.897
CRR073298Stem 215.613
CRR073299Stem 317.578
CRR073300Leaf 122.375
CRR073301Leaf 219.668
CRR073302Leaf 315.880
CRR073303Juvenile bud 118.813
CRR073304Juvenile bud 28.868
CRR073305Juvenile bud 320.465
CRR073306Third green 18.056
CRR073307Third green 25.483
CRR073308Third green 36.510
CRR073309Second white 117.374
CRR073310Second white 225.453
CRR073311Second white 334.275
CRR073312Silver flowering 127.977
CRR073313Silver flowering 227.177
CRR073314Silver flowering 325.978
CRR073315Gold flowering 10.255
CRR073316Gold flowering 20.325
CRR073317Gold flowering 30.201
CRR073318Tawny withering 10.120
CRR073319Tawny withering 20.164
CRR073320Tawny withering 30.144