Gene detail

Detail information of GWHGAAZE032088

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002263200.2	0	PREDICTED: probable anion transporter 6, chloroplastic [Vitis vinifera]
COG	YP_003588376.1	1E-41	major facilitator superfamily protein
Swissprot	tr\|Q3E9A0\|ANTR6_ARATH	0	Probable anion transporter 6, chloroplastic (Precursor)
trEMBL	tr\|F6HCH2\|F6HCH2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49918.1}
TAIR10	AT5G20380.1	0	phosphate transporter 4;5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	70306853	70321267	+
GWHAAZE00000009	mRNA	70306853	70321267	+
GWHAAZE00000009	exon	70306853	70307068	+
GWHAAZE00000009	exon	70307924	70308069	+
GWHAAZE00000009	exon	70308710	70308809	+
GWHAAZE00000009	exon	70309028	70309084	+
GWHAAZE00000009	exon	70309529	70309587	+
GWHAAZE00000009	exon	70309754	70309828	+
GWHAAZE00000009	exon	70310422	70310502	+
GWHAAZE00000009	exon	70310624	70310682	+
GWHAAZE00000009	exon	70310889	70310956	+
GWHAAZE00000009	exon	70311757	70311869	+
GWHAAZE00000009	exon	70312452	70312488	+
GWHAAZE00000009	exon	70312667	70312762	+
GWHAAZE00000009	exon	70313472	70313613	+
GWHAAZE00000009	exon	70313865	70313917	+
GWHAAZE00000009	exon	70320981	70321067	+
GWHAAZE00000009	exon	70321166	70321267	+
GWHAAZE00000009	CDS	70306853	70307068	+
GWHAAZE00000009	CDS	70307924	70308069	+
GWHAAZE00000009	CDS	70308710	70308809	+
GWHAAZE00000009	CDS	70309028	70309084	+
GWHAAZE00000009	CDS	70309529	70309587	+
GWHAAZE00000009	CDS	70309754	70309828	+
GWHAAZE00000009	CDS	70310422	70310502	+
GWHAAZE00000009	CDS	70310624	70310682	+
GWHAAZE00000009	CDS	70310889	70310956	+
GWHAAZE00000009	CDS	70311757	70311869	+
GWHAAZE00000009	CDS	70312452	70312488	+
GWHAAZE00000009	CDS	70312667	70312762	+
GWHAAZE00000009	CDS	70313472	70313613	+
GWHAAZE00000009	CDS	70313865	70313917	+
GWHAAZE00000009	CDS	70320981	70321067	+
GWHAAZE00000009	CDS	70321166	70321267	+

Transcript Sequence
>GWHTAAZE032126 ATAAAGGAGAAAGAGAAGGACAATCTCGCCGATACTACTGGAGTACTTACCGGTTTAAAAATCGACGATGAATTGGAGCAGAATGGGGGTTTAGTATCAGATTCTGAGGAGAAAGAGGGATTTGATTTGATTTTGCCGCCATGGAAGAATGTTCCTCAGAGATATAAACTCATTGGCACCACGTCCTTGGCCTTTGTTATCTGTAATATGGATAAGGTGAACTTGAGTATTGCTATTATTCCAATGTCACACCAATTTGGGTGGAATTCATCTGTGGCTGGACTGGTACAATCTTCTTTCTTTTGGGGGTATGCATTGAGTCAATTGCCAGGAGGTTGGCTTTCAAAGATATTTGGTGGAAGAGTAGTTCTTCAGGTTGGAGTCCTAACATGGTCACTTGCTACAGCCCTTGTTCCTGTTCTTGCTGGGTTTATGCCTGGACTAGTTTTGTCAAGAATTCTTGTTGGAATAGGGGAAGGTGTTTCACCATCAGCTGCCACGGATCTGATTGCCAGGCATTTCTTTGGCTGGCAAGCTTTGCCATGTGTCTTCTGCAAAAATGAGGACTTGAGATTCTTGCTAATACCGATTGAAGAGCGTTCACGGGCTGTGTCATTTGTTTTTGGTGGTTTGAGTGTTGGAAGTGTCGCTGGACTTCTTTTCGCCCCTCCCTTGATCCAAAATTTTGGTTGGGAATCTGTATTCTACTTGTTTGGACTTTTGGGGATAGCATGGTTTTTGGGATTTCAGTTTGTTACAGAAGAACCTTCAATTGGTGCTGCACTCACATCACGGTCTCAATCTATCTCTACTACAAAATCCTGGAGTACTTCAATGGAAGAATTGGGTGGTTCAATGAAGGTACCATGGAAAGCATTTTTCCAAAGTAGAGCAGTATTGGCAATGATATATGCACATTTTTGTGGAAGCTGGGGTCACTATACCTGTTTGTCTTGGCTCCCTACATATTTCAGTGAGGAGCTGGATCTTAATTTGACAGAAGCAGCATGGGTTTCTGTCCTTCCTCCTTTAGCTTCCATTTTTGTTACCAGCATTGCAGCACAACTTGCAGACAACTTAATTTCCCGTGGAGTTGAAACCACTGTGGTCCGGAAGTTATGCCAAACAATTGCCTTTTTGTCTCCTGCAGCCTGTATGATCCTTACGTCTTTGGACTTGGGATTGCCTCCATGGGAGGTTGTGGCAATTCTTACTGGCGGTTTAGCACTCTCGAGCTTTGCTTTGTCAGGACTTTATTGCACCCATCAAGATATTTCACCGGAATATGCCAGCATTCTTTTGGGCATTACCAACACTGTTGGGGCAGTGCCCGGAATTGTAGGCGTTGCTCTCACTGGTTATCTGCTTGATTCAACTCATTCATGGAGTATATCATTATTTGTACCATCAATCTTCTTCTACCTTACTGGTACAGTTGTATGGTTAGCATTCGCCAGCAGTAAGCCTCAAACCTTTTCAAAGAGAGGTTAA

Network for GWHGAAZE032088

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07690.17	MFS_1	63	448	1.10E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0005887	cellular_component	integral component of plasma membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.095
	SRR3591706	second leaf	53.367
	SRR3591707	mature leaf	67.395
	SRR3591708	Shoot apex	24.740
	SRR3591709	Stem	16.255
	SRR3591710	White floral bud	12.097
	SRR3591711	White flower	22.696
	SRR3591712	Green floral bud	11.978
	SRR3591713	Yellow flower	24.681
SRP173429	SRR8316895	Juvenile bud stage	9.266
	SRR8316896	Juvenile bud stage	15.549
	SRR8316897	Juvenile bud stage	8.792
	SRR8316894	Third green stage	5.602
	SRR8316900	Third green stage	16.899
	SRR8316901	Third green stage	19.235
	SRR8316898	Complete white stage	5.510
	SRR8316899	Complete white stage	22.313
	SRR8316903	Complete white stage	11.255
	SRR8316902	Silver flowering stage	6.598
	SRR8316904	Silver flowering stage	7.882
	SRR8316905	Silver flowering stage	4.385
	SRR8316906	Gold flowering stage	15.495
	SRR8316907	Gold flowering stage	13.456
	SRR8316908	Gold flowering stage	16.440
SRP132670	SRR6706286	Control	11.299
	SRR6706287	Light intensity 50%	11.181
	SRR6706288	Light intensity 20%	11.575
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.870
	CNS0095593	Slightly white alabastrum(diploid) 2	7.414
	CNS0095594	Slightly white alabastrum(diploid) 3	8.520
	CNS0095595	Whole white alabastrum(diploid) 2	6.038
	CNS0095596	Whole white alabastrum(diploid) 3	5.865
	CNS0095597	Whole white alabastrum(diploid) 4	4.354
	CNS0095598	Silvery flower (diploied) 1	14.535
	CNS0095599	Silvery flower (diploied) 2	10.721
	CNS0095600	Silvery flower (diploied) 3	23.860
	CNS0095601	Golden flower (diploid) 1	10.789
	CNS0095602	Golden flower (diploid) 2	22.019
	CNS0095603	Golden flower (diploid) 3	20.523
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.670
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.962
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.728
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.869
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.294
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.765
	CNS0095610	Silvery flower (tetraploid) 1	26.523
	CNS0095611	Silvery flower (tetraploid) 2	25.417
	CNS0095612	Silvery flower (tetraploid) 3	2.302
	CNS0095613	Golden flower (tetraploid) 1	12.576
	CNS0095614	Golden flower (tetraploid) 2	21.880
	CNS0095615	Golden flower (tetraploid) 3	10.651
CRA001975	CRR073297	Stem 1	7.734
	CRR073298	Stem 2	8.503
	CRR073299	Stem 3	6.682
	CRR073300	Leaf 1	6.882
	CRR073301	Leaf 2	11.007
	CRR073302	Leaf 3	7.075
	CRR073303	Juvenile bud 1	7.733
	CRR073304	Juvenile bud 2	5.693
	CRR073305	Juvenile bud 3	11.662
	CRR073306	Third green 1	0.829
	CRR073307	Third green 2	1.258
	CRR073308	Third green 3	1.185
	CRR073309	Second white 1	2.340
	CRR073310	Second white 2	3.025
	CRR073311	Second white 3	2.182
	CRR073312	Silver flowering 1	0.976
	CRR073313	Silver flowering 2	2.075
	CRR073314	Silver flowering 3	1.646
	CRR073315	Gold flowering 1	25.544
	CRR073316	Gold flowering 2	29.193
	CRR073317	Gold flowering 3	17.591
	CRR073318	Tawny withering 1	6.169
	CRR073319	Tawny withering 2	6.989
	CRR073320	Tawny withering 3	6.884