Gene detail

Detail information of GWHGAAZE032082

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009798559.1	0	PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like [Nicotiana sylvestris]
COG	YP_005440390.1	6E-103	monogalactosyldiacylglycerol synthase family protein
Swissprot	tr\|O82730\|MGDG2_ARATH	0	Monogalactosyldiacylglycerol synthase 2, chloroplastic (Precursor)
trEMBL	tr\|M1D0Y8\|M1D0Y8_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400078930}
TAIR10	AT5G20410.1	0	monogalactosyldiacylglycerol synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	70213801	70219034	-
GWHAAZE00000009	mRNA	70213801	70219034	-
GWHAAZE00000009	exon	70218771	70219034	-
GWHAAZE00000009	exon	70217388	70217560	-
GWHAAZE00000009	exon	70216382	70216543	-
GWHAAZE00000009	exon	70216150	70216291	-
GWHAAZE00000009	exon	70215117	70215341	-
GWHAAZE00000009	exon	70214895	70214957	-
GWHAAZE00000009	exon	70214729	70214803	-
GWHAAZE00000009	exon	70213801	70214269	-
GWHAAZE00000009	CDS	70218771	70219034	-
GWHAAZE00000009	CDS	70217388	70217560	-
GWHAAZE00000009	CDS	70216382	70216543	-
GWHAAZE00000009	CDS	70216150	70216291	-
GWHAAZE00000009	CDS	70215117	70215341	-
GWHAAZE00000009	CDS	70214895	70214957	-
GWHAAZE00000009	CDS	70214729	70214803	-
GWHAAZE00000009	CDS	70214009	70214269	-
GWHAAZE00000009	three_prime_UTR	70213801	70214008	-

Transcript Sequence
>GWHTAAZE032120 ATGGTGGGGACGGTAGGGACACCAAGAAAATCGATGAACAGGGTGTTTCAGAGAGTTGGGGTTTATGGATTTGGGGTTGGAAGCAGTCAAAAAAGGTGCAAATATGGAATTCAAGATGAAGATGAAACTATGGAGATGGTTCAAATTGGGGCTGAGAGGACCAAGAATGTGTTAATCTTGATGAGTGATACCGGTGGTGGTCACCGAGCCTCGGCCGAGGCGATTCGTGATGCTTTTAAGCTTGAATTTGGGGATGAATACAGGATTTTTGTGAAGGATGTTTGGAAGGAGTATACCGGGTGGCCCTTAAACAACTTGGAGAGACAGTACAAGTTCATGGTTAAACATGTACAACTCTGGAATGTTGCATTTCACAGTACCTCTCCTCGATGGATTCATGGTGTTTATCTTGCCGCCATTGCCGCCTTCTATGCCAAAGAGGTTGAGGCCGGTCTGATGGAGTACAAGCCCGACATTATCATAAGTGTACATCCTCTAATGCAACATATTCCCTTGTGGGTTCTTAAATGGCAAGGTCTACAGAAGAAAGTAATCTTTGTCACGGTCATTACTGACCTCAATACCTGTCATCGAACATGGTTTCATCCTGGGGTCAATCGATGCTACTGCCCCTCAGAGGAGGTAGCAAAGAGGGCTTTGCTTGATGGCCTTGAAGAATCTCAAGTGAGTGTGTTTGGCTTGCCCATTCGGCCCTCTTTTTGCCGCGCCGTACTCTCCAAGGATGACTTAAGAGTAGAACTTGAGATGGATCCATCATTACCAGCAGTTTTGCTGATGGGAGGTGGGGAAGGGATGGGTCCCGTGAAGAAAACTGCGAAGGAGCTTGGAGAATCTCTCTTTGACGAAGAAACCGGTAAACCAATTGGGCAATTAATTATCATATGTGGTCGAAACAAAGTTCTAGCTTCTACACTAGAATCCCTTGAATGGAAGATCCCGGTTAAGGTTAGAGGGTTCGAGACACAAATGGAGAAATGGATGGGTGCTTGTGATTGTATTATTACAAAAGCGGGACCGGGTACTATTGCGGAGGCGTTGATTCGGGGGCTCCCTATTATTCTCAATGATTACATTCCTGGACAAGAAAAGGGAAATGTTCCATATGTAGTAGACAATGGGGCTGGTGTGTTCACCCGGAGCCCTAAAGAAACAGCAAGGCTAGCGGCCGAATGGTTCGGCACGAAAACCAAGGAACTCAAGAGGATGTCCGAGAATGCGCTCAAACTAGCACAGCCAAATGCGGTATTTGACATCGTTAAGGATATTCATGGATTGGCATGCCAACGGGGACCTATAGCAAGTGTGCCTTACATGTTGACATCTTCATTTTCAAGCATAATTTAGCTAGATTACATTTGAATATCTTATATGCCAATGTAGGTTTGCCTTTTACTAGGATTGATTTTGTACAGTATAGTTTAGCTATGAAAATTATCATTCTTTGGCCTCAAGTGGCTTGGTATTTTAAGGTTTTTGTTTTTTCAAATAGTCAAGGTTTGATGTGGAGGATGGAATTATTGTTTCTTTTCCTTTCTTAGTGTCTTTTGGAAGT

Network for GWHGAAZE032082

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06925.12	MGDG_synth	68	236	2.30E-61
PF04101.17	Glyco_tran_28_C	263	386	1.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03715	MGD	Metabolic pathways	map01100
K03715	MGD	Glycerolipid metabolism	map00561

Gene Ontology

GO term	Ontology	Name
GO:0009247	biological_process	glycolipid biosynthetic process
GO:0016758	molecular_function	transferase activity, transferring hexosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.909
	SRR3591706	second leaf	12.465
	SRR3591707	mature leaf	20.540
	SRR3591708	Shoot apex	7.132
	SRR3591709	Stem	33.838
	SRR3591710	White floral bud	44.235
	SRR3591711	White flower	25.927
	SRR3591712	Green floral bud	24.659
	SRR3591713	Yellow flower	23.588
SRP173429	SRR8316895	Juvenile bud stage	20.893
	SRR8316896	Juvenile bud stage	25.316
	SRR8316897	Juvenile bud stage	18.073
	SRR8316894	Third green stage	13.624
	SRR8316900	Third green stage	19.608
	SRR8316901	Third green stage	27.697
	SRR8316898	Complete white stage	17.286
	SRR8316899	Complete white stage	40.163
	SRR8316903	Complete white stage	29.706
	SRR8316902	Silver flowering stage	9.406
	SRR8316904	Silver flowering stage	20.216
	SRR8316905	Silver flowering stage	6.638
	SRR8316906	Gold flowering stage	24.734
	SRR8316907	Gold flowering stage	27.935
	SRR8316908	Gold flowering stage	30.143
SRP132670	SRR6706286	Control	22.886
	SRR6706287	Light intensity 50%	34.310
	SRR6706288	Light intensity 20%	28.862
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.123
	CNS0095593	Slightly white alabastrum(diploid) 2	24.611
	CNS0095594	Slightly white alabastrum(diploid) 3	34.274
	CNS0095595	Whole white alabastrum(diploid) 2	20.014
	CNS0095596	Whole white alabastrum(diploid) 3	13.825
	CNS0095597	Whole white alabastrum(diploid) 4	21.337
	CNS0095598	Silvery flower (diploied) 1	26.505
	CNS0095599	Silvery flower (diploied) 2	21.676
	CNS0095600	Silvery flower (diploied) 3	30.040
	CNS0095601	Golden flower (diploid) 1	22.554
	CNS0095602	Golden flower (diploid) 2	26.562
	CNS0095603	Golden flower (diploid) 3	24.554
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.780
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.481
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.059
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.114
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.103
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.893
	CNS0095610	Silvery flower (tetraploid) 1	21.343
	CNS0095611	Silvery flower (tetraploid) 2	20.282
	CNS0095612	Silvery flower (tetraploid) 3	31.047
	CNS0095613	Golden flower (tetraploid) 1	14.892
	CNS0095614	Golden flower (tetraploid) 2	16.732
	CNS0095615	Golden flower (tetraploid) 3	25.429
CRA001975	CRR073297	Stem 1	10.782
	CRR073298	Stem 2	8.662
	CRR073299	Stem 3	7.233
	CRR073300	Leaf 1	11.057
	CRR073301	Leaf 2	16.477
	CRR073302	Leaf 3	10.740
	CRR073303	Juvenile bud 1	9.942
	CRR073304	Juvenile bud 2	14.385
	CRR073305	Juvenile bud 3	14.802
	CRR073306	Third green 1	18.457
	CRR073307	Third green 2	15.015
	CRR073308	Third green 3	16.216
	CRR073309	Second white 1	6.146
	CRR073310	Second white 2	6.848
	CRR073311	Second white 3	7.678
	CRR073312	Silver flowering 1	9.790
	CRR073313	Silver flowering 2	7.010
	CRR073314	Silver flowering 3	5.921
	CRR073315	Gold flowering 1	17.360
	CRR073316	Gold flowering 2	19.497
	CRR073317	Gold flowering 3	15.440
	CRR073318	Tawny withering 1	16.955
	CRR073319	Tawny withering 2	21.375
	CRR073320	Tawny withering 3	18.489