Gene detail

Detail information of GWHGAAZE032053

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009760235.1	0	PREDICTED: non-lysosomal glucosylceramidase-like isoform X2 [Nicotiana sylvestris]
COG	NP_925406.1	7E-122	hypothetical protein gll2460
trEMBL	tr\|B9IQ99\|B9IQ99_POPTR	0	Non-lysosomal glucosylceramidase {ECO:0000256\|PIRNR:PIRNR028944}
TAIR10	AT5G49900.1	0	Beta-glucosidase, GBA2 type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	69855626	69862144	-
GWHAAZE00000009	mRNA	69855626	69862144	-
GWHAAZE00000009	exon	69855626	69855920	-
GWHAAZE00000009	exon	69856562	69856852	-
GWHAAZE00000009	exon	69857228	69858158	-
GWHAAZE00000009	exon	69858388	69858449	-
GWHAAZE00000009	exon	69858527	69858599	-
GWHAAZE00000009	exon	69858745	69858812	-
GWHAAZE00000009	exon	69858971	69859152	-
GWHAAZE00000009	exon	69859317	69859461	-
GWHAAZE00000009	exon	69859557	69859595	-
GWHAAZE00000009	exon	69859775	69859830	-
GWHAAZE00000009	exon	69860075	69860128	-
GWHAAZE00000009	exon	69860215	69860318	-
GWHAAZE00000009	exon	69860422	69860522	-
GWHAAZE00000009	exon	69860833	69860903	-
GWHAAZE00000009	exon	69861149	69861248	-
GWHAAZE00000009	exon	69861354	69861424	-
GWHAAZE00000009	exon	69861540	69861596	-
GWHAAZE00000009	exon	69861845	69861949	-
GWHAAZE00000009	exon	69862139	69862144	-
GWHAAZE00000009	CDS	69862139	69862144	-
GWHAAZE00000009	CDS	69861845	69861949	-
GWHAAZE00000009	CDS	69861540	69861596	-
GWHAAZE00000009	CDS	69861354	69861424	-
GWHAAZE00000009	CDS	69861149	69861248	-
GWHAAZE00000009	CDS	69860833	69860903	-
GWHAAZE00000009	CDS	69860422	69860522	-
GWHAAZE00000009	CDS	69860215	69860318	-
GWHAAZE00000009	CDS	69860075	69860128	-
GWHAAZE00000009	CDS	69859775	69859830	-
GWHAAZE00000009	CDS	69859557	69859595	-
GWHAAZE00000009	CDS	69859317	69859461	-
GWHAAZE00000009	CDS	69858971	69859152	-
GWHAAZE00000009	CDS	69858745	69858812	-
GWHAAZE00000009	CDS	69858527	69858599	-
GWHAAZE00000009	CDS	69858388	69858449	-
GWHAAZE00000009	CDS	69857228	69858158	-
GWHAAZE00000009	CDS	69856562	69856852	-
GWHAAZE00000009	CDS	69855626	69855920	-

Transcript Sequence
>GWHTAAZE032091 ATGGCTGTTGACCCTGCAAAACCTGCATCACTGACGTGGCAACGAAAATTGAACTGTACCGGAAGTATCCCTTCACAGTTCACTCCAAGATTTCGTGAGATTATGCAAATGGCTCCATTAGGTTTGCGATTATGGCGGCATATAAATGAAGAGGCTGCAAAAGGAACACCATCCATAATGGATCCTTATAATAAACGACTTGTCACATGTTATCACGGCATTCCCCTAGGCGGTATTGGTGCAGGAAGCATTGGAAGAAGCTTTAGAGGTGAGTTCCAACGATTTCAACTATTCCCCAGAGAATGTGAAGATGCTCCAGTTTTAGCAAATCAATTTTCAGTTTTTGTTTCACGTCCAAATGGAAATAAATATTCTTCAGTATTATGCTCAGGAAGTCCAGAGATGCCCAAAGAAAGTACAGGATCGGGCATCGCATCCTGGGATTGGAACCTGGAGGGAGACAAATGCACATATCATGCTTTGTATCCAAGGGCTTGGACTATATATGATGGTGCACCTGATCCAGAGCTGAATATTGTTTGTCGCCAAATTTCACCATTTATCCCCCATAATTATAAAGAGAGCAGCTTTCCTGTCGCAGTATTTACATTCACACTATCTAACTCGGGAAAGACCGCTGCTGACGTCACCTTGCTTTTTACATGGGCTAATTCAGTGGGCGGGGCCTCCGGTTCTTCAGGTCATCATGTTAATTCAAAGATTGCGATGCAAGACGGTGTGCATGGAGTACTTCTACATCACAAGACTGCAAATGGACATCCTCCACTGACTTTTGCCATTGCTGCTAAAGAGACAGATGTTGTCCATGTGTCCGAGTGTCCTTGCTTTTTGATATCTGGAAATTTCCAAACTATAACAGCGAAAGATATGTGGCAAGAAATTAAAGATCACGGGTCATTTGGTCACGTTAACAACAGCGAAAATGGAATGCCCTCAAAGCCAGGATCATCTATTGGAGCAGCCATTGCAGCTTCTCTAAATCTTCCTTCTGGTACAGTTGGCGAAGTTACGTTCTCACTTGCATGGGACTGCCCAGAAATTAGATTTTCTAGTGGGAAGACTTACCACAGGCGCTATACAAGGTTTTATGGAACTCAAGGGGATGCTGCGGCAAGTATTGCACGTGAGGCTATTCTTGATCATGCCATTTGGGAATCTCATATTGAAGCATGGCAAAAAACAATACTCCAAGACAAATGGCTTCCTGAATGGTACCCAATAACTCTTTTCAATGAGCTTTATTATCTTAACGCAGGGGGTACAATCTGGACAGACGGATCTGCTCCAATGCAGAGCATTTCGACCAATGGAGGGAGAAAATTTTGCTTGGATAGACCTACGGTATCAGAGTTTAGAAACACAAATGATACTTCCAATCCAAACAACACGGCCACCGAGATTCTTGGAAGAATGACATTTGCAAATGAGCAGATACAAAATCTGGTAGCATCAAACTCTGCTCTTGGAACCTATTTACTTCAAAACGTTGAAGAGAACATTGGCCAGTTTCTCTATCTTGAAGGGATTGAATACCACATGTGGAACACTTATGATGTCCATTTTTATTCATCTTTTGCTTTACTTATGCTTTTCCCCAAACTCGAGCTCAGCATCCAAAGAGACTTTGCAAGGGCAGTAATGACACATGATCCAAGTAAAATTAAAATTATGAGCGATGGAACGTGGGTCCCGAGAAAGGTTCTTGGTGCTGTTCCACATGATATAGGACTCAATGATCCATGGTTCGAAGTTAATGCTTACAATTTCTATGATACAGACAGATGGAAAGATTTAAATTCTAAGTTTGTTCTTCAAGTTTATAGGGATATGGTTGCCACTGGCGATAAAGCATTTGCAATAGCTGTTTGGCCATCAGTGTATATTGCAATGGCTTATATGGATCAATTTGATAAAGATGGTGATGGCATGATCGAGAATGAAGGTTACCCCGATCAGACATATGATGCATGGACTGTCAATGGTGTGAGCGCGTATTGTGGTGGGCTATGGGTAGCGGCCCTTCAAGCTGCTTCAGCAATGGCACATGAAGTTGGTGATATCGAATCTTCTGGGTTTTTTTGGGCTAAATTTCAAAAAGCAAAGTGTGTATATGACAAGTTATGGAACGGTTCGTATTTTAATTATGATGATAGCGGCCGCATTTCGAGTTCATCTATTCAGGCTGATCAATTGGCTGGGCATTGGTATGCAAGAGCCAGCGGGCTTTCACCAGTTGCAGATGAAGAGAAAGTAAGAAGTGCACTTGAGACAATTTACCGGTTCAATGTGTTAAAGGTGAAAGGAGGCATGCGGGGAGCAGTAAATGGGATGAAACCCGATGGGAAAGTTGATATGTCCGCTATGCAATCTAGAGAAATTTGGACAGGGGTTACGTATTCTGTTGCCGCTGCTATGATTCAAGAGGATATGGTGGAAATGGCATTTCAAACAGCATCCGGTGTCTATGAAACTGCCTGGTCCGAGAAAGGTCTTGGATTGTCTTTTCAAACTCCAGAAGGGTGGAATTCAAATGACGAATGCAGATCTTTCAGTTACATGCGGCCGTTGGCCATATGGGCAATGCAGTGGGCTTTGTCAAAGCCGAAGCTGTCCAACAAGGAGGGTGAGGAGTCGAAGAAACTTGGAGCAAGTGAAAATACTTCATATCTAACTGGGAAGCATGCTGGATTTGCAAAAGTGGCACACCTTCTCAAGTTGCCAAAAGCGGAGCCACCTAAAAGCTTTCCACAGTTATTGCATGAATTCATTTGTAGAAGATTGTCATTGTAA

Network for GWHGAAZE032053

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12215.9	Glyco_hydr_116N	73	391	8.40E-105
PF04685.14	DUF608	508	868	9.40E-157

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17108	GBA2	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0006680	biological_process	glucosylceramide catabolic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004348	molecular_function	glucosylceramidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.971
	SRR3591706	second leaf	5.743
	SRR3591707	mature leaf	3.780
	SRR3591708	Shoot apex	7.249
	SRR3591709	Stem	95.648
	SRR3591710	White floral bud	4.783
	SRR3591711	White flower	2.831
	SRR3591712	Green floral bud	3.297
	SRR3591713	Yellow flower	4.393
SRP173429	SRR8316895	Juvenile bud stage	12.953
	SRR8316896	Juvenile bud stage	12.029
	SRR8316897	Juvenile bud stage	3.187
	SRR8316894	Third green stage	1.932
	SRR8316900	Third green stage	4.613
	SRR8316901	Third green stage	6.841
	SRR8316898	Complete white stage	3.217
	SRR8316899	Complete white stage	10.503
	SRR8316903	Complete white stage	5.611
	SRR8316902	Silver flowering stage	0.903
	SRR8316904	Silver flowering stage	1.787
	SRR8316905	Silver flowering stage	0.922
	SRR8316906	Gold flowering stage	5.114
	SRR8316907	Gold flowering stage	4.018
	SRR8316908	Gold flowering stage	6.176
SRP132670	SRR6706286	Control	4.957
	SRR6706287	Light intensity 50%	4.706
	SRR6706288	Light intensity 20%	4.751
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.001
	CNS0095593	Slightly white alabastrum(diploid) 2	5.737
	CNS0095594	Slightly white alabastrum(diploid) 3	6.756
	CNS0095595	Whole white alabastrum(diploid) 2	3.036
	CNS0095596	Whole white alabastrum(diploid) 3	3.169
	CNS0095597	Whole white alabastrum(diploid) 4	3.087
	CNS0095598	Silvery flower (diploied) 1	6.932
	CNS0095599	Silvery flower (diploied) 2	5.986
	CNS0095600	Silvery flower (diploied) 3	2.921
	CNS0095601	Golden flower (diploid) 1	4.403
	CNS0095602	Golden flower (diploid) 2	3.845
	CNS0095603	Golden flower (diploid) 3	3.131
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.709
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.375
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.331
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.860
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.793
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.434
	CNS0095610	Silvery flower (tetraploid) 1	2.849
	CNS0095611	Silvery flower (tetraploid) 2	3.270
	CNS0095612	Silvery flower (tetraploid) 3	2.456
	CNS0095613	Golden flower (tetraploid) 1	3.908
	CNS0095614	Golden flower (tetraploid) 2	5.944
	CNS0095615	Golden flower (tetraploid) 3	1.388
CRA001975	CRR073297	Stem 1	16.326
	CRR073298	Stem 2	8.504
	CRR073299	Stem 3	5.316
	CRR073300	Leaf 1	4.454
	CRR073301	Leaf 2	4.900
	CRR073302	Leaf 3	1.993
	CRR073303	Juvenile bud 1	1.207
	CRR073304	Juvenile bud 2	1.207
	CRR073305	Juvenile bud 3	2.192
	CRR073306	Third green 1	0.070
	CRR073307	Third green 2	0.404
	CRR073308	Third green 3	0.627
	CRR073309	Second white 1	0.145
	CRR073310	Second white 2	0.031
	CRR073311	Second white 3	0.288
	CRR073312	Silver flowering 1	0.469
	CRR073313	Silver flowering 2	0.341
	CRR073314	Silver flowering 3	1.323
	CRR073315	Gold flowering 1	1.462
	CRR073316	Gold flowering 2	2.259
	CRR073317	Gold flowering 3	1.741
	CRR073318	Tawny withering 1	16.965
	CRR073319	Tawny withering 2	17.977
	CRR073320	Tawny withering 3	15.486