Gene detail

Detail information of GWHGAAZE032031

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002264688.1	0	PREDICTED: protein BEARSKIN1 [Vitis vinifera]
Swissprot	tr\|Q9SV87\|BRN2_ARATH	3E-140	Protein BEARSKIN1
trEMBL	tr\|F6GVX3\|F6GVX3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44108.1}
TAIR10	AT4G10350.1	6E-113	NAC domain containing protein 70

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	69338232	69339912	-
GWHAAZE00000009	mRNA	69338232	69339912	-
GWHAAZE00000009	exon	69339705	69339912	-
GWHAAZE00000009	exon	69339229	69339521	-
GWHAAZE00000009	exon	69338232	69338867	-
GWHAAZE00000009	five_prime_UTR	69339874	69339912	-
GWHAAZE00000009	CDS	69339705	69339873	-
GWHAAZE00000009	CDS	69339229	69339521	-
GWHAAZE00000009	CDS	69338232	69338867	-

Transcript Sequence
>GWHTAAZE032069 TTGTGGGCTACGTAGCTGTTGTTGTTAACTGTAAGTGGAATGGCTACATCAAGTGGTGGTGGTGGTGTACCACCAGGGTTTAGGTTCCACCCAACAGACGAAGAGCTTCTTCACTACTACTTGAAGAAGAAGATTTCTTTCCAAAAATTCGACATGGACGTCATTCGGGAAGTTGATTTGAATAAGATCGAGCCTTGGGAGCTCCAAGAGAGATGTAAGATTGGGTCGACACCACAAAACGAGTGGTACTTTTTCAGCCACAAGGACAGAAAGTATCCTACGGGATCGAGGACAAATAGAGCTACAAATGCAGGATTTTGGAAGGCAACGGGGAGAGACAAATGCATTAGGAACACCTTCAAGAAGATTGGCATGAGGAAGACCCTCGTTTTCTATAGAGGCCGAGCTCCTCATGGCCAGAAGACTGACTGGATCATGCATGAGTACCGTCTTGAAGATGCTGATCATTTAGACTCTCAAGGAAACCCCACTTCTACTAATGAAGATGGATGGGTGATATGTAGGGTGTTCAAGAAGAAGAATCTATTCAAGGTTGGAAACGAAGGTGGAGCTAGCATGTCCTCTGATCAACTCAACACCACATCGATCACGAACGAGCCTCGCGCATACTCCCACAGAGACAATCACTATCTACTCCATCAACAACAACAACAACAGTCCTTCGATCTAGGCCTTAACTATTCTCACATGCCAGTGGAAGTGCCTCAGTACTCGCACAATATTCAAGCACAGAACTTCATCCCTACCCACAAGCGCTTAGGCTACGACTTCTCCACCCTCCCATCTGAGGATTCTCCATTAATGGTGAAGCAACTCATGTCGAACCCTAGAGACCAATGCGAGAGTGGCAGCCAAGATCTTGGCTACCAAGCTTGTGAGCCAGGGTTAGAAGTTGGGACGTGCGAAGCATCTCAGAGTACGGTTGCAGGGGGCAGAGACGAGAATTTGAATGAATGGGGGATGATAGACCACCGGCTTGTTACTTCTCAACTAGGCGGGCATGAAGATTCATCAAAAGGGGTGAGGTTTGAGGATGCAAATGCGTCGTCCATGCACCAGATCAATCAGCTCTCTCTTCGAGGAGAGATGATGGACTTTTGGGGCTACGGAAAGTAA

Network for GWHGAAZE032031

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	11	138	7.00E-37

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.925
	SRR3591706	second leaf	3.829
	SRR3591707	mature leaf	4.286
	SRR3591708	Shoot apex	7.519
	SRR3591709	Stem	4.942
	SRR3591710	White floral bud	2.157
	SRR3591711	White flower	2.200
	SRR3591712	Green floral bud	3.523
	SRR3591713	Yellow flower	0.392
SRP173429	SRR8316895	Juvenile bud stage	3.647
	SRR8316896	Juvenile bud stage	5.223
	SRR8316897	Juvenile bud stage	1.172
	SRR8316894	Third green stage	2.784
	SRR8316900	Third green stage	8.077
	SRR8316901	Third green stage	5.505
	SRR8316898	Complete white stage	1.632
	SRR8316899	Complete white stage	7.521
	SRR8316903	Complete white stage	2.581
	SRR8316902	Silver flowering stage	0.378
	SRR8316904	Silver flowering stage	1.260
	SRR8316905	Silver flowering stage	0.139
	SRR8316906	Gold flowering stage	1.038
	SRR8316907	Gold flowering stage	2.051
	SRR8316908	Gold flowering stage	1.258
SRP132670	SRR6706286	Control	9.598
	SRR6706287	Light intensity 50%	9.697
	SRR6706288	Light intensity 20%	8.920
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.927
	CNS0095593	Slightly white alabastrum(diploid) 2	3.650
	CNS0095594	Slightly white alabastrum(diploid) 3	2.751
	CNS0095595	Whole white alabastrum(diploid) 2	2.833
	CNS0095596	Whole white alabastrum(diploid) 3	3.449
	CNS0095597	Whole white alabastrum(diploid) 4	3.289
	CNS0095598	Silvery flower (diploied) 1	4.547
	CNS0095599	Silvery flower (diploied) 2	4.077
	CNS0095600	Silvery flower (diploied) 3	3.528
	CNS0095601	Golden flower (diploid) 1	5.054
	CNS0095602	Golden flower (diploid) 2	3.094
	CNS0095603	Golden flower (diploid) 3	3.547
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.124
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.343
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.319
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.833
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.825
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.792
	CNS0095610	Silvery flower (tetraploid) 1	3.253
	CNS0095611	Silvery flower (tetraploid) 2	3.788
	CNS0095612	Silvery flower (tetraploid) 3	2.100
	CNS0095613	Golden flower (tetraploid) 1	1.587
	CNS0095614	Golden flower (tetraploid) 2	2.442
	CNS0095615	Golden flower (tetraploid) 3	0.648
CRA001975	CRR073297	Stem 1	14.807
	CRR073298	Stem 2	11.919
	CRR073299	Stem 3	9.517
	CRR073300	Leaf 1	12.000
	CRR073301	Leaf 2	10.596
	CRR073302	Leaf 3	6.252
	CRR073303	Juvenile bud 1	10.075
	CRR073304	Juvenile bud 2	3.848
	CRR073305	Juvenile bud 3	7.779
	CRR073306	Third green 1	0.821
	CRR073307	Third green 2	0.593
	CRR073308	Third green 3	0.249
	CRR073309	Second white 1	0.156
	CRR073310	Second white 2	0.961
	CRR073311	Second white 3	0.638
	CRR073312	Silver flowering 1	0.392
	CRR073313	Silver flowering 2	0.898
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	11.854
	CRR073316	Gold flowering 2	18.695
	CRR073317	Gold flowering 3	8.395
	CRR073318	Tawny withering 1	4.932
	CRR073319	Tawny withering 2	5.396
	CRR073320	Tawny withering 3	6.910