Detail information of GWHGAAZE031947


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP03573.14.5304E-91unnamed protein product [Coffea canephora]
Swissprottr|O65759|H2AX_CICAR1E-88Histone H2AX
trEMBLtr|A0A068U7I1|A0A068U7I1_COFCA2E-91Histone H2A {ECO:0000256|RuleBase:RU003556}
TAIR10AT1G54690.14E-45gamma histone variant H2AX

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6778954767791186-
GWHAAZE00000009mRNA6778954767791186-
GWHAAZE00000009exon6778954767789768-
GWHAAZE00000009exon6779098667791186-
GWHAAZE00000009CDS6779098667791186-
GWHAAZE00000009CDS6778954767789768-
Transcript Sequence

Network for GWHGAAZE031947

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.25Histone10948.50E-15
PF16211.6Histone_H2A_C971304.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0046982molecular_functionprotein heterodimerization activity
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf176.577
SRR3591706second leaf73.341
SRR3591707mature leaf56.637
SRR3591708Shoot apex382.315
SRR3591709Stem111.142
SRR3591710White floral bud110.243
SRR3591711White flower120.686
SRR3591712Green floral bud129.142
SRR3591713Yellow flower85.806
SRP173429 SRR8316895Juvenile bud stage 128.544
SRR8316896Juvenile bud stage 166.077
SRR8316897Juvenile bud stage 75.257
SRR8316894Third green stage 51.998
SRR8316900Third green stage 166.849
SRR8316901Third green stage 162.941
SRR8316898Complete white stage 68.737
SRR8316899Complete white stage 176.605
SRR8316903Complete white stage 107.070
SRR8316902Silver flowering stage56.014
SRR8316904Silver flowering stage57.211
SRR8316905Silver flowering stage31.989
SRR8316906Gold flowering stage 73.974
SRR8316907Gold flowering stage 92.026
SRR8316908Gold flowering stage 96.098
SRP132670SRR6706286Control347.166
SRR6706287Light intensity 50%325.401
SRR6706288Light intensity 20%354.498
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1190.744
CNS0095593Slightly white alabastrum(diploid) 2200.627
CNS0095594Slightly white alabastrum(diploid) 3177.248
CNS0095595Whole white alabastrum(diploid) 2128.142
CNS0095596Whole white alabastrum(diploid) 3171.953
CNS0095597Whole white alabastrum(diploid) 4122.504
CNS0095598Silvery flower (diploied) 1106.683
CNS0095599Silvery flower (diploied) 2127.509
CNS0095600Silvery flower (diploied) 3107.712
CNS0095601Golden flower (diploid) 198.472
CNS0095602Golden flower (diploid) 295.056
CNS0095603Golden flower (diploid) 394.578
CNS0095604Slightly white alabastrum(tetraploid) 1165.629
CNS0095605Slightly white alabastrum(tetraploid) 2153.828
CNS0095606Slightly white alabastrum(tetraploid) 3237.386
CNS0095607Whole white alabastrum(tetraploid) 1114.522
CNS0095608Whole white alabastrum(tetraploid) 2102.905
CNS0095609Whole white alabastrum(tetraploid) 3154.260
CNS0095610Silvery flower (tetraploid) 1136.371
CNS0095611Silvery flower (tetraploid) 2118.939
CNS0095612Silvery flower (tetraploid) 368.326
CNS0095613Golden flower (tetraploid) 1136.527
CNS0095614Golden flower (tetraploid) 2128.676
CNS0095615Golden flower (tetraploid) 387.891
CRA001975CRR073297Stem 188.975
CRR073298Stem 287.992
CRR073299Stem 3143.529
CRR073300Leaf 175.356
CRR073301Leaf 283.958
CRR073302Leaf 394.266
CRR073303Juvenile bud 192.313
CRR073304Juvenile bud 289.730
CRR073305Juvenile bud 381.896
CRR073306Third green 150.979
CRR073307Third green 270.677
CRR073308Third green 358.895
CRR073309Second white 128.102
CRR073310Second white 234.979
CRR073311Second white 320.125
CRR073312Silver flowering 120.463
CRR073313Silver flowering 217.295
CRR073314Silver flowering 324.953
CRR073315Gold flowering 122.542
CRR073316Gold flowering 238.106
CRR073317Gold flowering 316.744
CRR073318Tawny withering 1145.386
CRR073319Tawny withering 2111.535
CRR073320Tawny withering 3154.506