Detail information of GWHGAAZE031920


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273273.20PREDICTED: probable nucleolar protein 5-2 [Vitis vinifera]
COGYP_001191801.15E-57C/D box methylation guide ribonucleoprotein complex aNOP56 subunit
Swissprottr|O04658|NOP5A_ARATH0Probable nucleolar protein 5-1
trEMBLtr|F6HTW5|F6HTW5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB58126.1}
TAIR10AT5G27120.10NOP56-like pre RNA processing ribonucleoprotein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6735885967362499-
GWHAAZE00000009mRNA6735885967362499-
GWHAAZE00000009exon6735885967359011-
GWHAAZE00000009exon6735912767359624-
GWHAAZE00000009exon6736016767360367-
GWHAAZE00000009exon6736069067360854-
GWHAAZE00000009exon6736125067361429-
GWHAAZE00000009exon6736203767362096-
GWHAAZE00000009exon6736224067362281-
GWHAAZE00000009exon6736242267362499-
GWHAAZE00000009CDS6736242267362499-
GWHAAZE00000009CDS6736224067362281-
GWHAAZE00000009CDS6736203767362096-
GWHAAZE00000009CDS6736125067361429-
GWHAAZE00000009CDS6736069067360854-
GWHAAZE00000009CDS6736016767360367-
GWHAAZE00000009CDS6735912767359624-
GWHAAZE00000009CDS6735885967359011-
Transcript Sequence

Network for GWHGAAZE031920

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08156.14NOP5NT2393.50E-08
PF08156.14NOP5NT61857.60E-05
PF01798.19Nop1864142.50E-82
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14565NOP58 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf54.235
SRR3591706second leaf15.921
SRR3591707mature leaf12.880
SRR3591708Shoot apex67.734
SRR3591709Stem26.203
SRR3591710White floral bud28.017
SRR3591711White flower51.935
SRR3591712Green floral bud49.599
SRR3591713Yellow flower30.751
SRP173429 SRR8316895Juvenile bud stage 29.103
SRR8316896Juvenile bud stage 35.215
SRR8316897Juvenile bud stage 19.448
SRR8316894Third green stage 15.724
SRR8316900Third green stage 45.543
SRR8316901Third green stage 36.167
SRR8316898Complete white stage 6.064
SRR8316899Complete white stage 38.803
SRR8316903Complete white stage 10.645
SRR8316902Silver flowering stage10.820
SRR8316904Silver flowering stage13.075
SRR8316905Silver flowering stage5.402
SRR8316906Gold flowering stage 21.373
SRR8316907Gold flowering stage 17.528
SRR8316908Gold flowering stage 23.194
SRP132670SRR6706286Control50.677
SRR6706287Light intensity 50%50.524
SRR6706288Light intensity 20%54.571
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.359
CNS0095593Slightly white alabastrum(diploid) 251.874
CNS0095594Slightly white alabastrum(diploid) 347.253
CNS0095595Whole white alabastrum(diploid) 235.379
CNS0095596Whole white alabastrum(diploid) 334.443
CNS0095597Whole white alabastrum(diploid) 425.188
CNS0095598Silvery flower (diploied) 131.318
CNS0095599Silvery flower (diploied) 224.839
CNS0095600Silvery flower (diploied) 324.856
CNS0095601Golden flower (diploid) 117.301
CNS0095602Golden flower (diploid) 222.738
CNS0095603Golden flower (diploid) 319.917
CNS0095604Slightly white alabastrum(tetraploid) 138.852
CNS0095605Slightly white alabastrum(tetraploid) 233.972
CNS0095606Slightly white alabastrum(tetraploid) 367.346
CNS0095607Whole white alabastrum(tetraploid) 117.336
CNS0095608Whole white alabastrum(tetraploid) 215.517
CNS0095609Whole white alabastrum(tetraploid) 343.584
CNS0095610Silvery flower (tetraploid) 126.349
CNS0095611Silvery flower (tetraploid) 223.461
CNS0095612Silvery flower (tetraploid) 314.814
CNS0095613Golden flower (tetraploid) 113.252
CNS0095614Golden flower (tetraploid) 220.552
CNS0095615Golden flower (tetraploid) 313.879
CRA001975CRR073297Stem 163.801
CRR073298Stem 254.270
CRR073299Stem 366.002
CRR073300Leaf 153.724
CRR073301Leaf 258.990
CRR073302Leaf 364.344
CRR073303Juvenile bud 163.688
CRR073304Juvenile bud 232.232
CRR073305Juvenile bud 357.345
CRR073306Third green 14.558
CRR073307Third green 25.416
CRR073308Third green 37.319
CRR073309Second white 111.976
CRR073310Second white 214.765
CRR073311Second white 310.846
CRR073312Silver flowering 19.948
CRR073313Silver flowering 211.619
CRR073314Silver flowering 38.554
CRR073315Gold flowering 139.604
CRR073316Gold flowering 243.112
CRR073317Gold flowering 317.825
CRR073318Tawny withering 167.283
CRR073319Tawny withering 268.273
CRR073320Tawny withering 388.863