Gene detail

Detail information of GWHGAAZE031910

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001235267.1	2.1191E-122	cysteine synthase [Glycine max]
COG	NP_811992.1	8E-85	cysteine synthase A
Swissprot	tr\|O23733\|CYSK1_BRAJU	5E-113	Cysteine synthase
trEMBL	tr\|A3RM06\|A3RM06_SOYBN	8E-123	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}
TAIR10	AT4G14880.4	3E-87	O-acetylserine (thiol) lyase (OAS-TL) isoform A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	67157600	67161230	+
GWHAAZE00000009	mRNA	67157600	67161230	+
GWHAAZE00000009	exon	67157600	67157644	+
GWHAAZE00000009	exon	67158203	67158466	+
GWHAAZE00000009	exon	67158547	67158684	+
GWHAAZE00000009	exon	67159063	67159171	+
GWHAAZE00000009	exon	67159354	67159433	+
GWHAAZE00000009	exon	67160570	67160650	+
GWHAAZE00000009	exon	67160972	67161230	+
GWHAAZE00000009	CDS	67157600	67157644	+
GWHAAZE00000009	CDS	67158203	67158466	+
GWHAAZE00000009	CDS	67158547	67158684	+
GWHAAZE00000009	CDS	67159063	67159171	+
GWHAAZE00000009	CDS	67159354	67159433	+
GWHAAZE00000009	CDS	67160570	67160650	+
GWHAAZE00000009	CDS	67160972	67161061	+
GWHAAZE00000009	three_prime_UTR	67161062	67161230	+

Transcript Sequence
>GWHTAAZE031948 ATGATTCAAGATGCAGAAGAGAAGGGACTGATTACCCCAGGGAAGACGGTACTCATTGAGGCTACTAGTGGTAATACCGGTATTGGTTTGGCATTTATCGCAGCAGTTAAAGGTTACAAGCTCATTGTAGTTATGCCGGTTACGTATAGCCTTGAGAGAAGGATTATTCTGAAAGCTTTCGGAGCAGAGTTGTACCTCACCGACATCGCCAAGGGCATTGATGGAGTTTTTCAAAAGGTGGATGAGTTACTGGGAAAGACACCAAATGGCTATTTTCTTCGGCAATTCGATAATCCTGCCAACCCAAAGATTCACTATGAAACTACTGGACCAGAGATCTGGAAGGGCTCTGAAGAGAAAGTTGATGCCTTGGTTTGCGGGATAGGGACCGGTGGTACGGTAACTGGTGCTGGGAAGTTCCTTAAGGAGCAAAATCCAAACATAAAGGTTTATGGTGTAGAACCAGCTGAAAGTGCCATTCTGAATGGGGGAAGCCCAGGCGAGTTACAATATCTTGCTCAGCATACTTGCATCCCTTTTATTATGTTAATGTTTTGCTTACATAAGATCCAAGGAATTGGTGCCGGTATCATCCCTAGTATCTTGGACGTCAGCCTTCTTGACGAAGTCGTTCCAGTAGGCATTTCATCTGGGGCTGCAGCTGCTGCAGCAATAAAGATTGCAAAGAGGCCTGAAAACACTGGGAAACTCATTGTTGTTATTTTCCCAAGCTTTGGAGAGCGGTACCTGTCCACTGTGCTGTTTGATTCCTTGCGTCAAGAAGCAGAAAGCATGACTTTTGAGTGAGTTGCTTCCGTGTTTCAAGAAGCTTGCTTTTATTATTTTGCACTCTTTGAGTATACGCTTCTTTATTTCTAGTGTTAGCTGAAATAACTTGATGGAAGTCAAATTAATAGGCTTTCCCTTGTGTTTTGTACTGCTTTTCATGTTACTCCATGTTTACTTCTCTATAGCA

Network for GWHGAAZE031910

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	2	229	2.90E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01738	cysK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.794
	SRR3591706	second leaf	0.596
	SRR3591707	mature leaf	0.132
	SRR3591708	Shoot apex	2.557
	SRR3591709	Stem	2.284
	SRR3591710	White floral bud	0.306
	SRR3591711	White flower	0.877
	SRR3591712	Green floral bud	0.326
	SRR3591713	Yellow flower	0.902
SRP173429	SRR8316895	Juvenile bud stage	2.170
	SRR8316896	Juvenile bud stage	6.399
	SRR8316897	Juvenile bud stage	0.538
	SRR8316894	Third green stage	1.390
	SRR8316900	Third green stage	2.001
	SRR8316901	Third green stage	2.579
	SRR8316898	Complete white stage	0.174
	SRR8316899	Complete white stage	1.048
	SRR8316903	Complete white stage	0.196
	SRR8316902	Silver flowering stage	0.195
	SRR8316904	Silver flowering stage	0.088
	SRR8316905	Silver flowering stage	0.110
	SRR8316906	Gold flowering stage	0.328
	SRR8316907	Gold flowering stage	0.236
	SRR8316908	Gold flowering stage	0.326
SRP132670	SRR6706286	Control	1.524
	SRR6706287	Light intensity 50%	1.456
	SRR6706288	Light intensity 20%	2.011
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.045
	CNS0095593	Slightly white alabastrum(diploid) 2	3.221
	CNS0095594	Slightly white alabastrum(diploid) 3	5.246
	CNS0095595	Whole white alabastrum(diploid) 2	3.001
	CNS0095596	Whole white alabastrum(diploid) 3	1.070
	CNS0095597	Whole white alabastrum(diploid) 4	1.653
	CNS0095598	Silvery flower (diploied) 1	1.041
	CNS0095599	Silvery flower (diploied) 2	0.372
	CNS0095600	Silvery flower (diploied) 3	0.522
	CNS0095601	Golden flower (diploid) 1	1.169
	CNS0095602	Golden flower (diploid) 2	0.440
	CNS0095603	Golden flower (diploid) 3	0.570
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.300
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.571
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.412
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.096
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.416
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.011
	CNS0095610	Silvery flower (tetraploid) 1	0.244
	CNS0095611	Silvery flower (tetraploid) 2	0.322
	CNS0095612	Silvery flower (tetraploid) 3	0.139
	CNS0095613	Golden flower (tetraploid) 1	0.024
	CNS0095614	Golden flower (tetraploid) 2	0.003
	CNS0095615	Golden flower (tetraploid) 3	0.031
CRA001975	CRR073297	Stem 1	3.188
	CRR073298	Stem 2	2.083
	CRR073299	Stem 3	3.593
	CRR073300	Leaf 1	1.587
	CRR073301	Leaf 2	1.844
	CRR073302	Leaf 3	2.013
	CRR073303	Juvenile bud 1	0.960
	CRR073304	Juvenile bud 2	0.462
	CRR073305	Juvenile bud 3	0.525
	CRR073306	Third green 1	0.541
	CRR073307	Third green 2	0.088
	CRR073308	Third green 3	0.111
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.061
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.052
	CRR073314	Silver flowering 3	0.030
	CRR073315	Gold flowering 1	0.575
	CRR073316	Gold flowering 2	0.148
	CRR073317	Gold flowering 3	0.050
	CRR073318	Tawny withering 1	6.093
	CRR073319	Tawny withering 2	5.149
	CRR073320	Tawny withering 3	2.252