Gene detail

Detail information of GWHGAAZE031901

Functional Annotation

Database	Orthologs	Annotation
Nr	AJB84621.1	zeta-carotene desaturase [Camellia sinensis]
COG	YP_007109803.1	zeta-carotene desaturase
Swissprot	tr\|Q9FV46\|ZDS_TARER	Zeta-carotene desaturase, chloroplastic/chromoplastic (Precursor)
trEMBL	tr\|Q8H0Q6\|Q8H0Q6_HELAN	Zeta-carotene desaturase {ECO:0000313\|EMBL:AEI70832.1}
TAIR10	AT3G04870.2	zeta-carotene desaturase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	66972169	66982409	+
GWHAAZE00000009	mRNA	66972169	66982409	+
GWHAAZE00000009	exon	66972169	66972673	+
GWHAAZE00000009	exon	66974280	66974404	+
GWHAAZE00000009	exon	66975582	66975716	+
GWHAAZE00000009	exon	66976779	66976851	+
GWHAAZE00000009	exon	66977018	66977091	+
GWHAAZE00000009	exon	66977786	66977890	+
GWHAAZE00000009	exon	66978034	66978278	+
GWHAAZE00000009	exon	66978395	66978482	+
GWHAAZE00000009	exon	66979897	66979939	+
GWHAAZE00000009	exon	66980032	66980188	+
GWHAAZE00000009	exon	66980761	66980889	+
GWHAAZE00000009	exon	66981040	66981112	+
GWHAAZE00000009	exon	66981440	66981604	+
GWHAAZE00000009	exon	66982251	66982409	+
GWHAAZE00000009	five_prime_UTR	66972169	66972486	+
GWHAAZE00000009	CDS	66972487	66972673	+
GWHAAZE00000009	CDS	66974280	66974404	+
GWHAAZE00000009	CDS	66975582	66975716	+
GWHAAZE00000009	CDS	66976779	66976851	+
GWHAAZE00000009	CDS	66977018	66977091	+
GWHAAZE00000009	CDS	66977786	66977890	+
GWHAAZE00000009	CDS	66978034	66978278	+
GWHAAZE00000009	CDS	66978395	66978482	+
GWHAAZE00000009	CDS	66979897	66979939	+
GWHAAZE00000009	CDS	66980032	66980188	+
GWHAAZE00000009	CDS	66980761	66980889	+
GWHAAZE00000009	CDS	66981040	66981112	+
GWHAAZE00000009	CDS	66981440	66981604	+
GWHAAZE00000009	CDS	66982251	66982409	+

Transcript Sequence
>GWHTAAZE031939 AATTCACACTCATATCCTCCAACCACATTAAAGTTAAACAATCGAATACGCAAAAGATGCATTTATTTAAAACCAAAAACAAACCAACACAAATATGCCTAACAATTTTTTAACTCTAGAGAGAAATTCTCTGCCCCCCCTCTCTCTCTCATGCTAACCAGACAAATCTCTCACCCCCAGCATCTCCTCTTCTCCAGATACTCTTATTCTTCTCAACTCAAAAAAACAAACACCTTTCGACTTCATTTCTCACCAAGCCAACACACATTCTATTCATTTTCACTCAAATTGTGTTTACTTGCATAGTTAGTTAAATTCATGGCTACTTCTTCTTCTTCTCCTCCTCCCATCTGTTTTCCGGCCACCGGAAAATTGACCACCGGTTTACGAAATCATTCTGCCGGATTAAGAATTTATGGTAGTCGCCGTCGGTTAGCCAGAACACGGAGATCGTTTGTTGTTCGGTCTGATTTGGACAGTAATGTTTCGGATATGAGTGTTAATGCTCCAAAAGGGTTATTTCCACCAGAACCTCAACACTATCGGGGGCCCAAGCTGAAAGTGGCTATTATAGGAGCTGGGCTTGCAGGCATGTCAACTGCTGTGGAGCTTTTAGATCAAGGCCATGAGGTGGATATATATGATCAAAGATCTTTCATTGGTGGAAAAGTTGGTTCGTTTGTTGATAAACGTGGAAACCACATTGAAATGGGACTTCATGTTTTCTTTGGTTGCTACAATAATCTTTTCCGTCTTATGAAAAAGGTTGGTGCTGAAAAAAATCTGCTTGTGAAGGATCATACTCACACATTTGTAAACAAAGGGGGTGAAATTGGCGACCTTGATTTTCGTTTTCCAGTAGGAGCACCATTACATGGCATTAGTGCTTTCCTGTCCACAAATCAGCTTAAGGTTTATGATAAAGCAAGAAATGCTTTGGCTCTGGCCCTCAGTCCAGTTGTACGCGCCCTTGTTGACCCAGATGGAGCAATGAAGGACATACGGAATTTGGATAGTATAAGTTTCTCTGACTGGTTCATGTCCAAAGGGGGCACACGCACAAGTATCCAGAGGATGTGGGACCCTGTTGCTTATGCTCTGGGGTTTATTGACTGTGATAATATCAGTGCCCGTTGTATGCTCACTATTTTCTCGTTGTTTGCGACTAAGACAGAGGCTTCCCTTTTGAGAATGCTTAAAGGTTCTCCTGATGTTTATTTGAGTGGTCCCATCAGAAATTACATCACAGAAAAAGGAGGAAGGTTCCACCTCAGGTGGGGATGCCGAGAAGTACTTTATGATAAAACTGCAGATGGAGAGACATATGTCTCTGGGATTGCCATGTCAAAGGCTACTCAAAAGAAAATCGTGAAAGCAGATGCTTATGTGGCTGCCTGTGATGTCCCTGGAATTAAAAGATTAGTACCACCAGAGTGGAGGCAGTGGGAGTTGTTTGAAAATATCTACAAACTAGATGGAGTCCCCGTTGTCACAGTGCAACTTAGATACAATGGCTGGGTCACAGAGTTACAGGATTTAGAGCGATCAAGGCAATTGCGGCAAGCTGCGGGGTTGGATAATCTCCTCTATACCCCGGATGCAGATTTCTCTTGCTTTGCAGATCTGGCACTGACGTCTCCTGAAGATTACTATCGGGAGGGAGAAGGCTCATTGCTCCAATGTGTGCTTACTCCCGGTGATCCGTACATGCCTTTACCAAATGAGGAAATCATCAGAAGAGTAACTGATCAGGTTCTGTCATTATTCCCATCTTCCCAAGGATTGGAAGTTACATGGTCATCTGTGGTCAAAATTGGGCAATCTTTGTACCGTGAGGGACCTGGTAAAGATCCATTTAGACCTAATCAGAAGACACCTGTGAAGAACTTCTTCCTTGCTGGCTCCTATACGAAACAGGATTATATAGACTCCATGGAAGGAGCAACTCTTTCAGGAAGGCAAGCTTCTGCATACATATGTGATGCGGGTGAAGAATTGATGGCTTTACAAAAAGAATTAGCTGCAATTTTATCCCAAGATCTTATTTATAACACAGACGAGTTGACCCTTGTCTGA

Network for GWHGAAZE031901

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01593.25	Amino_oxidase	89	553	1.30E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00514	ZDS, crtQ	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016117	biological_process	carotenoid biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016719	molecular_function	carotene 7,8-desaturase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.806
	SRR3591706	second leaf	45.890
	SRR3591707	mature leaf	41.290
	SRR3591708	Shoot apex	20.351
	SRR3591709	Stem	23.132
	SRR3591710	White floral bud	212.974
	SRR3591711	White flower	288.503
	SRR3591712	Green floral bud	119.296
	SRR3591713	Yellow flower	624.189
SRP173429	SRR8316895	Juvenile bud stage	20.706
	SRR8316896	Juvenile bud stage	29.311
	SRR8316897	Juvenile bud stage	37.697
	SRR8316894	Third green stage	16.183
	SRR8316900	Third green stage	95.560
	SRR8316901	Third green stage	85.165
	SRR8316898	Complete white stage	58.593
	SRR8316899	Complete white stage	120.053
	SRR8316903	Complete white stage	87.621
	SRR8316902	Silver flowering stage	64.939
	SRR8316904	Silver flowering stage	81.871
	SRR8316905	Silver flowering stage	42.935
	SRR8316906	Gold flowering stage	188.930
	SRR8316907	Gold flowering stage	165.726
	SRR8316908	Gold flowering stage	316.917
SRP132670	SRR6706286	Control	95.745
	SRR6706287	Light intensity 50%	104.102
	SRR6706288	Light intensity 20%	115.631
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.026
	CNS0095593	Slightly white alabastrum(diploid) 2	15.453
	CNS0095594	Slightly white alabastrum(diploid) 3	19.745
	CNS0095595	Whole white alabastrum(diploid) 2	21.210
	CNS0095596	Whole white alabastrum(diploid) 3	25.106
	CNS0095597	Whole white alabastrum(diploid) 4	27.209
	CNS0095598	Silvery flower (diploied) 1	45.081
	CNS0095599	Silvery flower (diploied) 2	48.222
	CNS0095600	Silvery flower (diploied) 3	191.688
	CNS0095601	Golden flower (diploid) 1	85.010
	CNS0095602	Golden flower (diploid) 2	204.147
	CNS0095603	Golden flower (diploid) 3	196.769
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.081
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.645
	CNS0095606	Slightly white alabastrum(tetraploid) 3	90.327
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.036
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.869
	CNS0095609	Whole white alabastrum(tetraploid) 3	144.018
	CNS0095610	Silvery flower (tetraploid) 1	406.902
	CNS0095611	Silvery flower (tetraploid) 2	476.492
	CNS0095612	Silvery flower (tetraploid) 3	567.533
	CNS0095613	Golden flower (tetraploid) 1	473.387
	CNS0095614	Golden flower (tetraploid) 2	556.279
	CNS0095615	Golden flower (tetraploid) 3	748.745
CRA001975	CRR073297	Stem 1	32.967
	CRR073298	Stem 2	29.093
	CRR073299	Stem 3	27.646
	CRR073300	Leaf 1	71.866
	CRR073301	Leaf 2	60.912
	CRR073302	Leaf 3	57.506
	CRR073303	Juvenile bud 1	87.868
	CRR073304	Juvenile bud 2	116.933
	CRR073305	Juvenile bud 3	74.401
	CRR073306	Third green 1	98.342
	CRR073307	Third green 2	41.547
	CRR073308	Third green 3	61.875
	CRR073309	Second white 1	141.791
	CRR073310	Second white 2	147.034
	CRR073311	Second white 3	186.672
	CRR073312	Silver flowering 1	192.365
	CRR073313	Silver flowering 2	170.815
	CRR073314	Silver flowering 3	166.862
	CRR073315	Gold flowering 1	41.871
	CRR073316	Gold flowering 2	64.717
	CRR073317	Gold flowering 3	35.308
	CRR073318	Tawny withering 1	8.696
	CRR073319	Tawny withering 2	10.531
	CRR073320	Tawny withering 3	9.077