Gene detail

Detail information of GWHGAAZE031864

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI29135.3	3.59752E-95	unnamed protein product [Vitis vinifera]
COG	YP_007568885.1	1E-39	3-hydroxyisobutyryl-CoA hydrolase
Swissprot	tr\|Q1PEY5\|HIBC2_ARATH	2E-82	Probable 3-hydroxyisobutyryl-CoA hydrolase 2
trEMBL	tr\|D7TFA0\|D7TFA0_VITVI	1E-95	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29135.3}
TAIR10	AT2G30650.1	3E-68	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	66071287	66081733	-
GWHAAZE00000009	mRNA	66071287	66081733	-
GWHAAZE00000009	exon	66071287	66071421	-
GWHAAZE00000009	exon	66074981	66075022	-
GWHAAZE00000009	exon	66075501	66075602	-
GWHAAZE00000009	exon	66076177	66076275	-
GWHAAZE00000009	exon	66076943	66077003	-
GWHAAZE00000009	exon	66077523	66077644	-
GWHAAZE00000009	exon	66080934	66081019	-
GWHAAZE00000009	exon	66081223	66081307	-
GWHAAZE00000009	exon	66081710	66081733	-
GWHAAZE00000009	CDS	66081710	66081733	-
GWHAAZE00000009	CDS	66081223	66081307	-
GWHAAZE00000009	CDS	66080934	66081019	-
GWHAAZE00000009	CDS	66077523	66077644	-
GWHAAZE00000009	CDS	66076943	66077003	-
GWHAAZE00000009	CDS	66076177	66076275	-
GWHAAZE00000009	CDS	66075501	66075602	-
GWHAAZE00000009	CDS	66074981	66075022	-
GWHAAZE00000009	CDS	66071287	66071421	-

Transcript Sequence
>GWHTAAZE031902 ATGATTTGGCACATTCATTCTTTGGTATTTGCAATGCCAGAAGTATCAATAGGACATATTCCTGATGTTGGTGCATCTTACTTCCTTTCTAGGTTACCCGGGCATTTCGGAGAATACTTGGGGCTAACAGGGACAAGAATTGACGGCAGAGAAATGTTTGCGTGTGGCCTTGCAACACATTTTGTCCTTTCGAAGGATCTTCAATCATTAGAGGATGCACTACTTGAGTCCGTTTCAACTGATACATCAATAATTTCTGAGCTCATCAACAAATTCACAGATAAGTCTCATGTGAAGCAAGATGAGTTTTGTAAGAGATTGCAGATTATCAACAAATGTTTTGGTAAAGAGACAGTTGAAGAAATATTAAAATCTCTTGAAAATGAAGTAGCAAATGGTGCAGAAAAATGGGTTGTGAAGGCAATGATTTCAATGAAGTCAGCGTCACCGATATGCCTGAAGATTTTCCTACGATCAATTAGAGAAGGACGAATGCAAAGACTTGAACAGTGTCTAAATCGTGATTATAGATTTGGCTTTCATGTAATACGTGGGAAATTGAACTATGATTTTTTTGAGGGTGCAAGAGCAATATTCTTTGAGAAGGACAAGAAACCAAAGTGGGAGCCCTCAAAATTGGAGCAAGTCACTGATGAAATGGTCAATCAGTTCTTCAGCAAGGATGATTTAAACTTTGAACTTCCAAATAACAGGTATCATCTATCATCAAAGCCTGTGATGAAATCCAATCTCTGA

Network for GWHGAAZE031864

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	8	225	1.50E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.477
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	2.941
	SRR3591709	Stem	0.268
	SRR3591710	White floral bud	8.800
	SRR3591711	White flower	2.285
	SRR3591712	Green floral bud	12.219
	SRR3591713	Yellow flower	0.211
SRP173429	SRR8316895	Juvenile bud stage	5.036
	SRR8316896	Juvenile bud stage	9.073
	SRR8316897	Juvenile bud stage	6.642
	SRR8316894	Third green stage	7.355
	SRR8316900	Third green stage	55.445
	SRR8316901	Third green stage	45.901
	SRR8316898	Complete white stage	1.863
	SRR8316899	Complete white stage	11.188
	SRR8316903	Complete white stage	1.602
	SRR8316902	Silver flowering stage	0.097
	SRR8316904	Silver flowering stage	0.091
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.172
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	12.222
	SRR6706287	Light intensity 50%	14.586
	SRR6706288	Light intensity 20%	16.393
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.075
	CNS0095593	Slightly white alabastrum(diploid) 2	12.533
	CNS0095594	Slightly white alabastrum(diploid) 3	16.085
	CNS0095595	Whole white alabastrum(diploid) 2	17.028
	CNS0095596	Whole white alabastrum(diploid) 3	19.658
	CNS0095597	Whole white alabastrum(diploid) 4	7.393
	CNS0095598	Silvery flower (diploied) 1	0.200
	CNS0095599	Silvery flower (diploied) 2	0.535
	CNS0095600	Silvery flower (diploied) 3	0.214
	CNS0095601	Golden flower (diploid) 1	1.542
	CNS0095602	Golden flower (diploid) 2	0.569
	CNS0095603	Golden flower (diploid) 3	0.202
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.753
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.264
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.914
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.328
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.382
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.440
	CNS0095610	Silvery flower (tetraploid) 1	0.412
	CNS0095611	Silvery flower (tetraploid) 2	0.806
	CNS0095612	Silvery flower (tetraploid) 3	0.338
	CNS0095613	Golden flower (tetraploid) 1	0.625
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.734
	CRR073298	Stem 2	6.755
	CRR073299	Stem 3	3.796
	CRR073300	Leaf 1	17.904
	CRR073301	Leaf 2	13.008
	CRR073302	Leaf 3	14.660
	CRR073303	Juvenile bud 1	2.265
	CRR073304	Juvenile bud 2	0.546
	CRR073305	Juvenile bud 3	0.834
	CRR073306	Third green 1	0.056
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.050
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.217
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.062
	CRR073313	Silver flowering 2	0.021
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000