Detail information of GWHGAAZE031846


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010557907.17.72899E-32PREDICTED: THO complex subunit 1 isoform X2 [Tarenaya hassleriana]
Swissprottr|Q93VM9|THOC1_ARATH6E-31THO complex subunit 1
trEMBLtr|F6HVB5|F6HVB5_VITVI4E-32Putative uncharacterized protein {ECO:0000313|EMBL:CCB58627.1}
TAIR10AT5G09860.21E-27nuclear matrix protein-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6582740565828836+
GWHAAZE00000009mRNA6582740565828836+
GWHAAZE00000009exon6582740565827521+
GWHAAZE00000009exon6582762365827705+
GWHAAZE00000009exon6582875265828836+
GWHAAZE00000009CDS6582740565827521+
GWHAAZE00000009CDS6582762365827705+
GWHAAZE00000009CDS6582875265828836+
Transcript Sequence

Network for GWHGAAZE031846

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11957.9efThoc13668.80E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12878THOC1 Spliceosome map03040
RNA transportmap03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.741
SRR3591706second leaf11.883
SRR3591707mature leaf15.663
SRR3591708Shoot apex20.167
SRR3591709Stem15.437
SRR3591710White floral bud10.942
SRR3591711White flower16.951
SRR3591712Green floral bud17.698
SRR3591713Yellow flower10.357
SRP173429 SRR8316895Juvenile bud stage 17.714
SRR8316896Juvenile bud stage 28.784
SRR8316897Juvenile bud stage 12.134
SRR8316894Third green stage 9.394
SRR8316900Third green stage 24.844
SRR8316901Third green stage 25.489
SRR8316898Complete white stage 8.145
SRR8316899Complete white stage 26.264
SRR8316903Complete white stage 15.221
SRR8316902Silver flowering stage9.502
SRR8316904Silver flowering stage12.098
SRR8316905Silver flowering stage6.163
SRR8316906Gold flowering stage 21.519
SRR8316907Gold flowering stage 21.059
SRR8316908Gold flowering stage 23.721
SRP132670SRR6706286Control16.254
SRR6706287Light intensity 50%16.205
SRR6706288Light intensity 20%16.983
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.251
CNS0095593Slightly white alabastrum(diploid) 218.500
CNS0095594Slightly white alabastrum(diploid) 314.582
CNS0095595Whole white alabastrum(diploid) 214.769
CNS0095596Whole white alabastrum(diploid) 314.181
CNS0095597Whole white alabastrum(diploid) 412.028
CNS0095598Silvery flower (diploied) 118.306
CNS0095599Silvery flower (diploied) 217.059
CNS0095600Silvery flower (diploied) 318.098
CNS0095601Golden flower (diploid) 117.496
CNS0095602Golden flower (diploid) 215.406
CNS0095603Golden flower (diploid) 320.705
CNS0095604Slightly white alabastrum(tetraploid) 120.045
CNS0095605Slightly white alabastrum(tetraploid) 216.415
CNS0095606Slightly white alabastrum(tetraploid) 336.137
CNS0095607Whole white alabastrum(tetraploid) 111.060
CNS0095608Whole white alabastrum(tetraploid) 214.542
CNS0095609Whole white alabastrum(tetraploid) 329.335
CNS0095610Silvery flower (tetraploid) 123.157
CNS0095611Silvery flower (tetraploid) 220.527
CNS0095612Silvery flower (tetraploid) 317.203
CNS0095613Golden flower (tetraploid) 113.980
CNS0095614Golden flower (tetraploid) 216.629
CNS0095615Golden flower (tetraploid) 39.198
CRA001975CRR073297Stem 111.530
CRR073298Stem 215.496
CRR073299Stem 311.788
CRR073300Leaf 113.667
CRR073301Leaf 210.258
CRR073302Leaf 38.346
CRR073303Juvenile bud 19.413
CRR073304Juvenile bud 25.272
CRR073305Juvenile bud 38.810
CRR073306Third green 14.161
CRR073307Third green 23.797
CRR073308Third green 32.889
CRR073309Second white 12.747
CRR073310Second white 23.060
CRR073311Second white 34.242
CRR073312Silver flowering 13.079
CRR073313Silver flowering 21.054
CRR073314Silver flowering 30.714
CRR073315Gold flowering 12.952
CRR073316Gold flowering 211.014
CRR073317Gold flowering 34.120
CRR073318Tawny withering 17.953
CRR073319Tawny withering 27.724
CRR073320Tawny withering 35.552