Gene detail

Detail information of GWHGAAZE031827

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18917.1	9.701E-172	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8L7A4\|AGD11_ARATH	1E-148	Probable ADP-ribosylation factor GTPase-activating protein AGD11
trEMBL	tr\|A0A068VEA8\|A0A068VEA8_COFCA	4E-172	Coffea canephora DH200=94 genomic scaffold, scaffold_306 {ECO:0000313\|EMBL:CDP18917.1}
TAIR10	AT3G07940.1	3E-113	Calcium-dependent ARF-type GTPase activating protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	65518863	65524188	+
GWHAAZE00000009	mRNA	65518863	65524188	+
GWHAAZE00000009	exon	65518863	65518970	+
GWHAAZE00000009	exon	65520734	65520897	+
GWHAAZE00000009	exon	65521275	65521515	+
GWHAAZE00000009	exon	65522305	65522421	+
GWHAAZE00000009	exon	65522779	65522874	+
GWHAAZE00000009	exon	65523904	65524188	+
GWHAAZE00000009	CDS	65518863	65518970	+
GWHAAZE00000009	CDS	65520734	65520897	+
GWHAAZE00000009	CDS	65521275	65521515	+
GWHAAZE00000009	CDS	65522305	65522421	+
GWHAAZE00000009	CDS	65522779	65522874	+
GWHAAZE00000009	CDS	65523904	65524188	+

Transcript Sequence
>GWHTAAZE031865 TCTGTAAATCTTGGATCATTTATATGTATCAAGTGTTCTGGAGTACATAGAAGCCTTGGAGTGCATATATCAAAGGTATGCTATTCATGGTCTACCCTGCCTTTCATAGTTTTATCAGTTAAGCTAGATGACTGGACAGATGAACAAGTTGATAGTTTGATAGGTTTGGGTGGAAATACTGTAGTAAACTTGAAGTACGAAGCCTGTATCCCGGAAAATGTTACAAAACCTAATCCAGATTCTACTATTGAGGATCGTTCTGATTTCATTAGGAGAAAATACGAGCTGCAACAATTTTTTAACTCAGATGAGCAGAATTCGTGTCCATTTCCAGCACCGTCATCGTCGGGTTGCACTACTTTAATCTGTCACTATGGTGGAGGCCCAGACAAGAAATTCTTTGAGAAGCATACAAACAGTTCGCGTATTCATGGTATTGGACACGCATTTCGAAACAGCTGGAGAAGGAAAGATTCTGACCACAATAAGAGCTCTAAGAAGAGTAACTCAATGGCAGGTATGGTCGAATTTGTAGGGCTGATAAAAGTTAATGTGGTGAGAGGCACAAACCTAGCTGTTCGAGATATGATGTCCAGTGATCCATATGTCATCCTCTCATTGGGTAGCCAATCGGTGAAGACGCGAGTAATAAAGAATAATCTGAACCCTGTCTGGAATGAACAGCTAATGCTATCAATACCAGAAAGTGTTCCTCCTCTGAAGTTGCTTGTGTATGACAAGGATACATTCACACACGACGATTTCATGGGAGAAGCAGAGATTGATATACAACCCCTCGTCTCAGCGGCCAAGGCCTCGGAGGATTGCAAGATGGAGGATGAGTCAATGCAGCTAGGAAAGTGGGTCGCTAGCAAAGAGAACACCCTCATTAAAGATGGCATCATAAACCTTATAGACGGGAAGGTTAAGCAAGAGATTTTTCTCAAACTACAAAATGTTGAAAGGGGAGTCTTACATATCGAGCTTGAATGTCTTCCTCTCACTCAATAG

Network for GWHGAAZE031827

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01412.19	ArfGap	1	101	9.00E-19
PF00168.31	C2	180	273	2.90E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12486	SMAP	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005096	molecular_function	GTPase activator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.113
	SRR3591706	second leaf	4.846
	SRR3591707	mature leaf	2.901
	SRR3591708	Shoot apex	7.833
	SRR3591709	Stem	7.834
	SRR3591710	White floral bud	8.990
	SRR3591711	White flower	5.313
	SRR3591712	Green floral bud	12.597
	SRR3591713	Yellow flower	5.148
SRP173429	SRR8316895	Juvenile bud stage	5.021
	SRR8316896	Juvenile bud stage	9.621
	SRR8316897	Juvenile bud stage	4.369
	SRR8316894	Third green stage	2.388
	SRR8316900	Third green stage	9.067
	SRR8316901	Third green stage	9.375
	SRR8316898	Complete white stage	1.538
	SRR8316899	Complete white stage	3.314
	SRR8316903	Complete white stage	2.368
	SRR8316902	Silver flowering stage	0.485
	SRR8316904	Silver flowering stage	1.515
	SRR8316905	Silver flowering stage	0.253
	SRR8316906	Gold flowering stage	2.016
	SRR8316907	Gold flowering stage	1.967
	SRR8316908	Gold flowering stage	0.906
SRP132670	SRR6706286	Control	3.983
	SRR6706287	Light intensity 50%	2.917
	SRR6706288	Light intensity 20%	3.163
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.284
	CNS0095593	Slightly white alabastrum(diploid) 2	5.722
	CNS0095594	Slightly white alabastrum(diploid) 3	12.231
	CNS0095595	Whole white alabastrum(diploid) 2	8.556
	CNS0095596	Whole white alabastrum(diploid) 3	11.060
	CNS0095597	Whole white alabastrum(diploid) 4	10.716
	CNS0095598	Silvery flower (diploied) 1	2.049
	CNS0095599	Silvery flower (diploied) 2	1.683
	CNS0095600	Silvery flower (diploied) 3	2.575
	CNS0095601	Golden flower (diploid) 1	1.852
	CNS0095602	Golden flower (diploid) 2	1.991
	CNS0095603	Golden flower (diploid) 3	1.478
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.327
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.423
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.004
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.306
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.990
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.919
	CNS0095610	Silvery flower (tetraploid) 1	1.242
	CNS0095611	Silvery flower (tetraploid) 2	0.827
	CNS0095612	Silvery flower (tetraploid) 3	0.822
	CNS0095613	Golden flower (tetraploid) 1	0.495
	CNS0095614	Golden flower (tetraploid) 2	0.564
	CNS0095615	Golden flower (tetraploid) 3	0.358
CRA001975	CRR073297	Stem 1	5.243
	CRR073298	Stem 2	5.369
	CRR073299	Stem 3	3.892
	CRR073300	Leaf 1	6.634
	CRR073301	Leaf 2	4.049
	CRR073302	Leaf 3	4.075
	CRR073303	Juvenile bud 1	2.384
	CRR073304	Juvenile bud 2	2.476
	CRR073305	Juvenile bud 3	0.781
	CRR073306	Third green 1	1.017
	CRR073307	Third green 2	0.572
	CRR073308	Third green 3	0.923
	CRR073309	Second white 1	0.221
	CRR073310	Second white 2	0.977
	CRR073311	Second white 3	0.681
	CRR073312	Silver flowering 1	0.559
	CRR073313	Silver flowering 2	0.480
	CRR073314	Silver flowering 3	1.114
	CRR073315	Gold flowering 1	3.211
	CRR073316	Gold flowering 2	1.036
	CRR073317	Gold flowering 3	1.121
	CRR073318	Tawny withering 1	0.797
	CRR073319	Tawny withering 2	0.222
	CRR073320	Tawny withering 3	0.225